Browse Element(s) Details

Os.7174.1.S1_at

Description

gb:AF402801.1
DB_XREF= gi:15430724
TID=Os.7174.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7174 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) clone S14053 putative glutathione S-transferase OsGSTU14 mRNA, complete cds.
PROD=putative glutathione S-transferase OsGSTU14
FL= gb:AF402801.1 gb:AK059726.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g38540	11/11	glutathione S-transferase GSTU6, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g38470	Os.5441.1.S1_at	11/11	10	+	20221525..20222677	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489	Os.46634.1.S1_at	11/11	10	+	20223979..20231020	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489	Os.7794.1.S1_at	11/11	10	+	20223979..20231020	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489	Os.2612.1.S1_at	11/11	10	+	20223979..20231020	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489	Os.46634.1.S1_x_at	11/11	10	+	20223979..20231020	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38510	OsAffx.30711.1.S1_at	11/11	10	+	20235991..20236556	hypothetical protein
LOC_Os10g38520	OsAffx.29536.3.S1_x_at	3/11	10	+	20239435..20239857	hypothetical protein
LOC_Os10g38540	Os.7174.1.S1_at	11/11	10	+	20245154..20246432	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38540	Os.46634.1.S1_x_at	1/11	10	+	20245154..20246432	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38540	Os.46635.1.S1_x_at	1/11	10	+	20245154..20246432	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38550	NA	NA	10	+	20250679..20251251	transposon protein, putative, unclassified
LOC_Os10g38560	NA	NA	10	+	20252697..20254109	retrotransposon protein, putative, unclassified
LOC_Os10g38570	NA	NA	10	+	20257542..20258111	transposon protein, putative, unclassified
LOC_Os10g38580	Os.5053.1.S1_at	11/11	10	+	20260075..20261169	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38590	Os.15699.1.S1_at	8/11	10	+	20262829..20263917	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38590	Os.40000.1.S1_x_at	1/11	10	+	20262829..20263917	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38600	Os.40000.1.S1_at	11/11	10	+	20265385..20266432	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38600	Os.40000.1.S1_x_at	11/11	10	+	20265385..20266432	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610	Os.8868.1.S1_at	11/11	10	+	20267390..20268697	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610	Os.40000.1.S1_x_at	3/11	10	+	20267390..20268697	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630	Os.7732.1.S1_at	10/11	10	+	20270215..20272232	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630	OsAffx.5632.1.S1_x_at	2/11	10	+	20270215..20272232	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630	OsAffx.5632.1.S1_at	2/11	10	+	20270215..20272232	glutathione S-transferase GSTU6, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009407	biological_process	toxin catabolism
GO:0005737	cellular_component	cytoplasm
GO:0004364	molecular_function	glutathione transferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.7174.1.S1_at--142--1043	1	Chr10:20246043..20246067 (25 bp)	TTGGTCAGTTCCCAGTTGGTACGAG	LOC_Os10g38540
Os.7174.1.S1_at--506--859	2	Chr10:20246059..20246083 (25 bp)	TGGTACGAGATTTGCTCTGCTCCAA	LOC_Os10g38540
Os.7174.1.S1_at--230--525	1	Chr10:20246139..20246163 (25 bp)	GAATCTAACAATGTCCATCGATGGG	LOC_Os10g38540
Os.7174.1.S1_at--395--785	1	Chr10:20246189..20246213 (25 bp)	GGTACCTCAATTACTTTTTGCTGAA	LOC_Os10g38540
Os.7174.1.S1_at--932--553	1	Chr10:20246216..20246240 (25 bp)	GAAACAAATCTCATCGTCACTGCTT	LOC_Os10g38540
Os.7174.1.S1_at--554--51	1	Chr10:20246228..20246252 (25 bp)	ATCGTCACTGCTTTGGGCCTTTGGC	LOC_Os10g38540
Os.7174.1.S1_at--404--843	1	Chr10:20246250..20246274 (25 bp)	GGCCAATTGTCATTTTTCAAGTTGC	LOC_Os10g38540
Os.7174.1.S1_at--920--231	1	Chr10:20246276..20246300 (25 bp)	AAAGTGTGATGTTCTTCCGGGTCAT	LOC_Os10g38540
Os.7174.1.S1_at--20--641	1	Chr10:20246307..20246331 (25 bp)	GATCGGATCTCCTTGTTACCGGGAC	LOC_Os10g38540
Os.7174.1.S1_at--441--677	1	Chr10:20246321..20246345 (25 bp)	GTTACCGGGACATCATTTCTTCCAA	LOC_Os10g38540
Os.7174.1.S1_at--793--17	1	Chr10:20246407..20246431 (25 bp)	ATTTTCTATTTCAATTGCGTGCCTA	LOC_Os10g38540

Target Sequence

TTGGTCAGTTCCCAGTTGGTACGAGATTTGCTCTGCTCCAACAAAGAGTATCTTAAGGTATTGATACCTCACGGTACCAA
ATCGTTTCTAACCGTTGAATCTAACAATGTCCATCGATGGGAAACGATTTAGTACTGTAAGGTACCGGTACCTCAATTAC
TTTTTGCTGAACCGAAACAAATCTCATCGTCACTGCTTTGGGCCTTTGGCCAATTGTCATTTTTCAAGTTGCAAAAGTGT
GATGTTCTTCCGGGTCATCCGTTCGATCGGATCTCCTTGTTACCGGGACATCATTTCTTCCAATAAAGGAAAATGTTGAA
TTTTGGTATTTAAATTGTTTAGTAGTATGTGATATANAAANTGAATTTTCTATTTCAATTGCGTGCCTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis