Browse Element(s) Details


Os.7192.1.S1_at

Description gb:AK067183.1
DB_XREF= gi:32977201
TID=Os.7192.1
CNT=56
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.7192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095L01, full insert sequence.
FL= gb:AK067183.1 gb:AK061677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0441011/11Aconitate hydratase, cytoplasmic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04340Os.6433.1.S1_at11/113+1982232..198409524-methylenesterol C-methyltransferase 2, putative, expressed
LOC_Os03g04350OsAffx.24962.1.S1_at11/113+1987355..1987722hypothetical protein
LOC_Os03g04350Os.25910.1.S1_s_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04350OsAffx.16321.1.S1_x_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04360Os.50503.1.S1_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360Os.50503.1.S2_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.20487.1.S1_s_at3/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.11592.1.S1_x_at2/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04370Os.55093.1.S1_at11/113+1993159..1993854expressed protein
LOC_Os03g04380Os.51396.1.S1_at11/113+1994068..1994713Complex 1 protein containing protein, expressed
LOC_Os03g04390Os.49142.1.S1_at11/113+1994759..1997434pentatricopeptide, putative, expressed
LOC_Os03g04400Os.47349.1.S1_at9/113+1997847..2001075DnaJ domain containing protein, expressed
LOC_Os03g04410Os.7192.1.S1_at11/113+2005928..2012682Aconitate hydratase, cytoplasmic, putative, expressed
LOC_Os03g04420OsAffx.12731.1.S1_at11/113+2020097..2021140hypothetical protein
LOC_Os03g04430Os.14914.1.S1_at11/113+2034567..2038086protein phosphatase 2C homolog, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003994molecular_functionaconitate hydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7192.1.S1_at--200--7571Chr03:2006671..2006695 (25 bp)
GGGCTGCGAAGGGTCCAATGCTACA
LOC_Os03g04410
Os.7192.1.S1_at--1108--5151Chr03:2006518..2006542 (25 bp)
GCAACCTTGCTGGTATGGGTATCAT
LOC_Os03g04410
Os.7192.1.S1_at--21--6911Chr03:2006500..2006524 (25 bp)
GTATCATTCCTCTATGCTTCAAGTC
LOC_Os03g04410
Os.7192.1.S1_at--576--2171Chr03:2006461..2006485 (25 bp)
ACACCCTTGGATTGACTGGCCATGA
LOC_Os03g04410
Os.7192.1.S1_at--974--8451Chr03:2006445..2006469 (25 bp)
TGGCCATGAGCGTTTCACGGTTCAC
LOC_Os03g04410
Os.7192.1.S1_at--524--3371Chr03:2006423..2006447 (25 bp)
CACCTCCCGGCCAATGTAAGTGAGA
LOC_Os03g04410
Os.7192.1.S1_at--810--9711Chr03:2006398..2006422 (25 bp)
TCAAGCCTGGGCAAGATGTTACTGT
LOC_Os03g04410
Os.7192.1.S1_at--371--2971Chr03:2006363..2006387 (25 bp)
AATGGGAAGTCCTTCACTTGCACAC
LOC_Os03g04410
Os.7192.1.S1_at--651--7731Chr03:2006229..2006253 (25 bp)
GGTGGAGCTTGCATACTACGACAAT
LOC_Os03g04410
Os.7192.1.S1_at--658--8751Chr03:2006105..2006129 (25 bp)
TGATTAGCGCAACCCCATTTTTTAG
LOC_Os03g04410
Os.7192.1.S1_at--338--9031Chr03:2006013..2006037 (25 bp)
TGCAGTTGTACGCTGCCACGGGAAA
LOC_Os03g04410
Target Sequence 
GGGCTGCGAAGGGTCCAATGCTACAGGGAGTCAAGGCTGTGATTGCTAAGAGCTTTGAAAGGATTCACCGCAGCAACCTT
GCTGGTATGGGTATCATTCCTCTATGCTTCAAGTCAGGGGAGGACGCCGACACCCTTGGATTGACTGGCCATGAGCGTTT
CACGGTTCACCTCCCGGCCAATGTAAGTGAGATCAAGCCTGGGCAAGATGTTACTGTGACGACTGATAATGGGAAGTCCT
TCACTTGCACACTTCGATTTGACACTGAGGTGGAGCTTGCATACTACGACAATGGTGGCATTTTACCGTATGTCATCAGA
AAGATCGCCGAGCAGTAGGATGAACGCTCAAGANGATTGCGATGAGGCGAATCGTAATTGTTGTAAACAGCTTGATTAGC
GCAACCCCATTTTTTAGGAATACCTTTCAAATAACCTTCTGAGATATCCGCGAAGAACTCAGAAATTTTGTGAGCTACTA
CACTTGCAGTTGTACGCTGCCACGGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis