Browse Element(s) Details


Os.7210.1.S1_at

Description gb:AK059380.1
DB_XREF= gi:32969398
TID=Os.7210.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.7210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-G01, full insert sequence.
FL= gb:AK059380.1 gb:AK073015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3619011/11Glycosyltransferase QUASIMODO1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36160OsAffx.30149.1.S1_s_at11/119+20838039..20839803expressed protein
LOC_Os09g36160Os.51763.1.S1_x_at1/119+20838039..20839803expressed protein
LOC_Os09g36170NANA9+20843528..20844198hypothetical protein
LOC_Os09g36180Os.49939.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36180OsAffx.6491.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36190Os.7210.1.S1_at11/119+20862162..20866259Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g36200Os.11666.1.S1_s_at11/119+20868241..20870596senescence-inducible chloroplast stay-green protein 2, putative, expressed
LOC_Os09g36200Os.11666.1.S1_at11/119+20868241..20870596senescence-inducible chloroplast stay-green protein 2, putative, expressed
LOC_Os09g36210NANA9+20880430..20881086Harpin-induced protein 1 containing protein
LOC_Os09g36220Os.8142.1.S1_a_at11/119+20884692..20889357Two-component response regulator-like PRR95, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0045489biological_processpectin biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7210.1.S1_at--92--6471Chr09:20862670..20862694 (25 bp)
GATAATGCTGCTGTTGTTCATTACA
LOC_Os09g36190
Os.7210.1.S1_at--885--8031Chr09:20862623..20862647 (25 bp)
GGAGTTAGCAATGACCAAGTACAGA
LOC_Os09g36190
Os.7210.1.S1_at--882--8551Chr09:20862554..20862578 (25 bp)
TGGATGCAACTTGGCGGAGTAGATA
LOC_Os09g36190
Os.7210.1.S1_at--539--1031Chr09:20862487..20862511 (25 bp)
AGGTGCTTCTATTAAGTGGAGTAAA
LOC_Os09g36190
Os.7210.1.S1_at--1062--3071Chr09:20862464..20862488 (25 bp)
AATACACGGCCGGTGTCAGTTGTTC
LOC_Os09g36190
Os.7210.1.S1_at--875--4471Chr09:20862456..20862480 (25 bp)
GCCGGTGTCAGTTGTTCTGAAAAAA
LOC_Os09g36190
Os.7210.1.S1_at--997--9732Chr09:20867549..20867573 (25 bp)
TAATTGCGTCATTGCTGGAATCTGC
NONE
Os.7210.1.S1_at--1108--9092Chr09:20867537..20867561 (25 bp)
TGCTGGAATCTGCAACTTTGTCTGC
NONE
Os.7210.1.S1_at--91--2052Chr09:20862260..20862284 (25 bp)
ACTTTGTCTGCAACCGTGATGTGGG
LOC_Os09g36190
Os.7210.1.S1_at--610--8371Chr09:20862236..20862260 (25 bp)
GGCGTCTTTTTTCTATGGTGTGCTT
LOC_Os09g36190
Os.7210.1.S1_at--443--8691Chr09:20862218..20862242 (25 bp)
TGTGCTTGGGCCCTGTTTTTAAGTC
LOC_Os09g36190
Target Sequence 
GATAATGCTGCTGTTGTTCATTACAACGGTAACATGAAGCCATGGCTGGAGTTAGCAATGACCAAGTACAGACCATATTG
GACAAGGTATATAAAGTATGATCACCCTTACATCCGTGGATGCAACTTGGCGGAGTAGATATGATGTAAAAAGCTGACGG
AGAAGATCACCCAGCCTGATCAGAGGTGCTTCTATTAAGTGGAGTAAATACACGGCCGGTGTCAGTTGTTCTGAAAAAAA
TAAAATGCGTTAACGGTAGCTTTCAGGCTTGCCTGCCGGCTTAATTTTGATGAACCTGTCACTGGAACTTTCTCTCCAGC
TGATCGATCGATCACCGCATGAGTTGATGGATCGAATGGATGGTTGAGAGATAATTTTCGGTTTTAATTGCGTCATTGCT
GGAATCTGCAACTTTGTCTGCAACCGTGATGTGGGGCGTCTTTTTTCTATGGTGTGCTTGGGCCCTGTTTTTAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis