Browse Element(s) Details


Os.7237.1.S1_a_at

Description gb:AK070136.1
DB_XREF= gi:32980160
TID=Os.7237.1
CNT=47
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.7237 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041E14, full insert sequence.
FL= gb:AK070136.1 gb:AK100468.1 gb:AK103935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5420011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54170Os.49761.1.S1_at11/113+30998772..31005425MADS-box protein CMB1, putative, expressed
LOC_Os03g54180NANA3+31010290..31010564hypothetical protein
LOC_Os03g54190OsAffx.13487.1.S1_at11/113+31014511..31016225expressed protein
LOC_Os03g54200Os.7237.1.S1_a_at11/113+31028016..31030309expressed protein
LOC_Os03g54210OsAffx.25712.1.S1_at11/113+31031792..31032259hypothetical protein
LOC_Os03g54220Os.23317.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.52485.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.23317.1.S2_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.49341.1.S1_x_at5/113+31033044..31037646expressed protein
LOC_Os03g54220Os.51537.1.S1_at1/113+31033044..31037646expressed protein
LOC_Os03g54230OsAffx.13488.1.S1_at11/113+31041615..31042091Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative
LOC_Os03g54240Os.49363.3.S1_at11/113+31044663..31047885expressed protein
LOC_Os03g54240Os.49363.1.S1_x_at10/113+31044663..31047885expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7237.1.S1_a_at--1129--7911Chr03:31028963..31028987 (25 bp)
GGATTACCGGAGACCGAGCCAGTGT
LOC_Os03g54200
Os.7237.1.S1_a_at--1101--4611Chr03:31028914..31028938 (25 bp)
GCGATGGTGGAGACCTTTACTTCAT
LOC_Os03g54200
Os.7237.1.S1_a_at--1076--5991Chr03:31028905..31028929 (25 bp)
GAGACCTTTACTTCATACTGTCCAG
LOC_Os03g54200
Os.7237.1.S1_a_at--182--9932Chr03:31105801..31105841 (25 bp)
TACTGTCCAGGCCAATCATGCGGTG
NONE
Os.7237.1.S1_a_at--208--3352Chr03:31105845..31105869 (25 bp)
CACGTCTGCCGATTCAACATGACAA
NONE
Os.7237.1.S1_a_at--297--8471Chr03:31028792..31028816 (25 bp)
TGGCGCCCAGATAAGATTGTTCCTT
LOC_Os03g54200
Os.7237.1.S1_a_at--92--9252Chr03:31105920..31105943 (24 bp)
TCCTTCTGGTTTGTTGGGCTGTGAA
NONE
Os.7237.1.S1_a_at--968--7571Chr03:31028757..31028781 (25 bp)
GGGCTGTGAATTCTTCAGACACCTT
LOC_Os03g54200
Os.7237.1.S1_a_at--697--1411Chr03:31028741..31028765 (25 bp)
AGACACCTTGATAGTCAGCGCCTTG
LOC_Os03g54200
Os.7237.1.S1_a_at--175--10072Chr03:31105965..31105989 (25 bp)
TAGTCAGCGCCTTGTTCCTGACAAT
NONE
Os.7237.1.S1_a_at--421--3991Chr03:31028692..31028716 (25 bp)
CGGGCAAAGTGCAATCCTGGGTCGA
LOC_Os03g54200
Target Sequence 
GGATTACCGGAGACCGAGCCAGTGTACCCCCTGCTGAGCATGGAGGAAGGCGATGGTGGAGACCTTTACTTCATACTGTC
CAGGCCAATCATGCGGTGGGAGGACCCTGCGGTGCACCACGTCTGCCGATTCAACATGACAAGCAAGAAGCTTGTGTCCA
ACCCTCTTTCCTGGCGCCCAGATAAGATTGTTCCTTCTGGTTTGTTGGGCTGTGAATTCTTCAGACACCTTGATAGTCAG
CGCCTTGTTCCTGACAATAGGAAGATGGATGCGGGCAAAGTGCAATCCTGGGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7237.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis