Browse Element(s) Details


Os.7254.2.S1_x_at

Description gb:AK065607.1
DB_XREF= gi:32975625
TID=Os.7254.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7254 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034H14, full insert sequence.
FL= gb:AK058493.1 gb:AK065607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1963010/11Peptide chain release factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19590Os.17740.1.S1_x_at1/115+11392507..11397016retrotransposon protein, putative, unclassified, expressed
LOC_Os05g19600NANA5+11397430..11398784Alpha-expansin 11 precursor, putative, expressed
LOC_Os05g19610OsAffx.14762.1.S1_at10/115+11400912..11405671hypothetical protein
LOC_Os05g19620Os.24057.1.A1_at11/115+11410701..11414726expressed protein
LOC_Os05g19620OsAffx.7216.1.S1_at2/115+11410701..11414726expressed protein
LOC_Os05g19620OsAffx.6363.1.S1_at2/115+11410701..11414726expressed protein
LOC_Os05g19630Os.7254.1.S1_at10/115+11415600..11418456Peptide chain release factor 1, putative, expressed
LOC_Os05g19630Os.7254.2.S1_x_at10/115+11415600..11418456Peptide chain release factor 1, putative, expressed
LOC_Os05g19640NANA5+11431573..11431896hypothetical protein
LOC_Os05g19650Os.45173.5.S1_x_at4/115+11434783..11442721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19650Os.45173.1.S1_x_at2/115+11434783..11442721retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0006415biological_processtranslational termination
GO:0009657biological_processplastid organization and biogenesis
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009507cellular_componentchloroplast
GO:0003747molecular_functiontranslation release factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7254.2.S1_x_at--95--5651Chr05:11416122..11416146 (25 bp)
GACAGGTCCGAACGTATCCGAACAT
LOC_Os05g19630
Os.7254.2.S1_x_at--227--3211Chr05:11416086..11416110 (25 bp)
CAAGGGCGTGTTACCGATCATCGTG
LOC_Os05g19630
Os.7254.2.S1_x_at--206--7951Chr05:11416012..11416036 (25 bp)
GGATATCTTCATTGATGCGCTCCTC
LOC_Os05g19630
Os.7254.2.S1_x_at--724--4131Chr05:11415995..11416019 (25 bp)
CGCTCCTCCTGCGTTATGAAATGGA
LOC_Os05g19630
Os.7254.2.S1_x_at--400--8751Chr05:11415881..11415905 (25 bp)
TGTATACATCGCACTGAACCGGCAG
LOC_Os05g19630
Os.7254.2.S1_x_at--759--1611Chr05:11415784..11415808 (25 bp)
AGCTGTATCGCCCATTATTCTGAAA
LOC_Os05g19630
Os.7254.2.S1_x_at--297--5031Chr05:11415759..11415783 (25 bp)
GCAGTAGCAGCCAAACAGTTTTTCT
LOC_Os05g19630
Os.7254.2.S1_x_at--560--9591Chr05:11415734..11415758 (25 bp)
TCATATTTTTTATCGCGCCGCAAGT
LOC_Os05g19630
Os.7254.2.S1_x_at--930--1971Chr05:11415697..11415721 (25 bp)
ACTGAATCACGAGTGGCTGCCACAT
LOC_Os05g19630
Os.7254.2.S1_x_at--49--4791Chr05:11415682..11415706 (25 bp)
GCTGCCACATCGGTGTTCAGTCAAA
LOC_Os05g19630
Os.7254.2.S1_x_at--1006--2011Chr05:11415598..11415622 (25 bp)
ACTACAGTCTACATCCTTATGTTAA
NONE
Target Sequence 
GACAGGTCCGAACGTATCCGAACATACAACTTTCCACAAGGGCGTGTTACCGATCATCGTGTTGGGATCNACGCACCACT
CCATAGAAGATGTTATGGAGGGGGAGAGCTTGGATATCTTCATTGATGCGCTCCTCCTGCGTTATGAAATGGACGCAATC
GCTTCATTTGCTTCTTAAGTCATACTGGTTTTGTGGTTTCTTTTAGCATCAACTACATCGGGACCAAACAGAGAAGGAAC
CATGTATACATCGCACTGAACCGGCAGAGACAACGTCAAGAATCTTGAGTTCTCAAGTTTTCCTTATTCTCAATGTATAA
GCATGTAGCTTAGGATCATAGCTGTATCGCCCATTATTCTGAAAGCAGTAGCAGCCAAACAGTTTTTCTTCATATTTTTT
ATCGCGCCGCAAGTTATTTGTGGGCAACTGAATCACGAGTGGCTGCCACATCGGTGTTCAGTCAAATGGGATTACAATTT
TGACAGAGATAAATGGGATTACAAATTTGACAGAGAACTATGTTAACTACAGTCTACATCCTTATGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7254.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis