Browse Element(s) Details


Os.7272.1.S1_at

Description gb:AK061152.1
DB_XREF= gi:32971170
TID=Os.7272.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative aldose 1-epimerase - like protein (OSJNAa0034B05.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-F01, full insert sequence.
FL= gb:AK061152.1 gb:AK121800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0672010/11Aldose 1-epimerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06640NANA10+3430659..3435076transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06650NANA10+3436782..3437165transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06660Os.47463.1.S1_x_at4/1110+3438069..3441769transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06660Os.14491.2.S1_x_at4/1110+3438069..3441769transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06670OsAffx.18155.1.S1_x_at11/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.18155.1.S1_at11/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.28340.1.S1_x_at1/1110+3443307..3444545hypothetical protein
LOC_Os10g06670OsAffx.28340.3.S1_x_at1/1110+3443307..3444545hypothetical protein
LOC_Os10g06680Os.5945.1.S1_at11/1110+3446976..3448411expressed protein
LOC_Os10g06690NANA10+3448548..3449049expressed protein
LOC_Os10g06700Os.6251.1.S1_at11/1110+3452154..3453460F-box domain containing protein, expressed
LOC_Os10g06710OsAffx.8492.1.S1_at11/1110+3456306..3459335Amidase family protein, expressed
LOC_Os10g06720Os.7272.1.S1_at10/1110+3459712..3462343Aldose 1-epimerase family protein, expressed
LOC_Os10g06730NANA10+3467607..3468398transposon protein, putative, unclassified
LOC_Os10g06740OsAffx.18157.1.S1_at11/1110+3484713..3488266Leucine Rich Repeat family protein, expressed
LOC_Os10g06740OsAffx.26258.3.S1_at1/1110+3484713..3488266Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7272.1.S1_at--660--4051Chr10:3460285..3460309 (25 bp)
CGATGTGCCTGGAGGATATGACCAT
LOC_Os10g06720
Os.7272.1.S1_at--330--9811Chr10:3460261..3460285 (25 bp)
TAACTATGTGCTGGACTCTGGCGAA
LOC_Os10g06720
Os.7272.1.S1_at--918--2731Chr10:3460233..3460257 (25 bp)
AAGAATGGCCTGAAGCATGCTGCCA
LOC_Os10g06720
Os.7272.1.S1_at--802--2811Chr10:3460202..3460226 (25 bp)
AAGATTCATCGAACTCACGGACCCT
LOC_Os10g06720
Os.7272.1.S1_at--678--5831Chr10:3460176..3460200 (25 bp)
GACCTCTGGACTGATGCACCTGGAA
LOC_Os10g06720
Os.7272.1.S1_at--1106--1211Chr10:3460148..3460172 (25 bp)
AGTTCTACACTGCTAACTATGTGGA
LOC_Os10g06720
Os.7272.1.S1_at--990--4931Chr10:3460087..3460111 (25 bp)
GCATTCCGGAGTATGCTTGGAAACC
LOC_Os10g06720
Os.7272.1.S1_at--901--7671Chr10:3460059..3460083 (25 bp)
GGGTTTCCTAATGCCATCAACCAAC
LOC_Os10g06720
Os.7272.1.S1_at--343--6071Chr10:3459975..3459999 (25 bp)
GAGTTCTCAGCCTAATTAGTGATGC
LOC_Os10g06720
Os.7272.1.S1_at--640--9811Chr10:3459861..3459885 (25 bp)
TAAATATTAGTTACCAGACCTGGAT
LOC_Os10g06720
Os.7272.1.S1_at--671--2871Chr10:3459711..3459735 (25 bp)
AAGTGGTTGCACGTATATTTGAGTA
NONE
Target Sequence 
CGATGTGCCTGGAGGATATGACCATAACTATGTGCTGGACTCTGGCGAAGAGAAGAATGGCCTGAAGCATGCTGCCANGC
TGAAAGATTCATCGAACTCACGGACCCTGGACCTCTGGACTGATGCACCTGGAATGCAGTTCTACACTGCTAACTATGTG
GATGGCNTAACTGGCAAAGGTGGTGCCGTTTATGNGAAGCATTCCGGAGTATGCTTGGAAACCCAGGGGTTTCCTAATGC
CATCAACCAACCCAATTTCCCCTCCGTGGTGGTGCAGCCTGGTGAGAAGTATAAGCACACTATGCTGTTTGAGTTCTCAG
CCTAATTAGTGATGCTGTGAACAGCTCAAATGGCTGCAACTGCAGCTCATTGTAGAATCAAATAAGAGAAAATCTAGCAG
AAATCTAAGATGTAGAGCAAAGAATAAATATTAGTTACCAGACCTGGATGGTTGTATCTTGTCTTACAACCAGAATAATA
TAATACGAATAAATATCAGTTACCAGACCTGGATAGTTGTATCTTGTCTTACAACCAGAATAATATAATACGAATGTTCA
GAGGTAGATTTATGAAGTGGTTGCACGTATATTTGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis