Browse Element(s) Details


OsAffx.18157.1.S1_at

Description tigr:9638.m00590
TID=OsAffx.18157.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative receptor-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0674011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06720Os.7272.1.S1_at10/1110+3459712..3462343Aldose 1-epimerase family protein, expressed
LOC_Os10g06730NANA10+3467607..3468398transposon protein, putative, unclassified
LOC_Os10g06740OsAffx.18157.1.S1_at11/1110+3484713..3488266Leucine Rich Repeat family protein, expressed
LOC_Os10g06740OsAffx.26258.3.S1_at1/1110+3484713..3488266Leucine Rich Repeat family protein, expressed
LOC_Os10g06750OsAffx.6591.1.S1_at11/1110+3491204..3496199hypothetical protein
LOC_Os10g06750OsAffx.528.1.S1_at1/1110+3491204..3496199hypothetical protein
LOC_Os10g06760Os.27570.1.S1_at11/1110+3499052..3502794Leucine Rich Repeat family protein, expressed
LOC_Os10g06770OsAffx.20728.1.S1_at11/1110+3509939..3510908hypothetical protein
LOC_Os10g06780OsAffx.30320.2.S1_x_at11/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780OsAffx.30320.1.S1_x_at6/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780Os.46721.1.S1_x_at2/1110+3511322..3512248Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18157.1.S1_at--54--8491Chr10:3487621..3487645 (25 bp)
TGGCGGAGAGCTTGTCCTATCTTCA
LOC_Os10g06740
OsAffx.18157.1.S1_at--373--8951Chr10:3487649..3487673 (25 bp)
TGACTGTGTGCCCATGATTATCCAT
LOC_Os10g06740
OsAffx.18157.1.S1_at--761--7091Chr10:3487680..3487704 (25 bp)
GTCAAATCGAGCAACATCCTGATGG
LOC_Os10g06740
OsAffx.18157.1.S1_at--209--4871Chr10:3487712..3487736 (25 bp)
GCTAGTACCCAAGCTCACAGATTTT
LOC_Os10g06740
OsAffx.18157.1.S1_at--907--5651Chr10:3487775..3487799 (25 bp)
GACAGTGTCTGTCGTTGTTGGCACC
LOC_Os10g06740
OsAffx.18157.1.S1_at--755--9091Chr10:3487811..3487921 (25 bp)
TGCTCCAGAGCATGGATACTCCACG
LOC_Os10g06740
OsAffx.18157.1.S1_at--1094--6911Chr10:3487958..3487982 (25 bp)
GTAGTGCTTCTTGAACTGTTGTGTC
LOC_Os10g06740
OsAffx.18157.1.S1_at--420--411Chr10:3488052..3488076 (25 bp)
ATCAGGCAGATCACTCCAACATCAT
LOC_Os10g06740
OsAffx.18157.1.S1_at--904--6531Chr10:3488144..3488168 (25 bp)
GATTTAGCGATGACCTGCACTCAGG
LOC_Os10g06740
OsAffx.18157.1.S1_at--666--9011Chr10:3488159..3488183 (25 bp)
TGCACTCAGGTTTCTTGCCAGTTAA
LOC_Os10g06740
OsAffx.18157.1.S1_at--20--4431Chr10:3488175..3488199 (25 bp)
GCCAGTTAAGGCCATCCATGAGGGA
LOC_Os10g06740
Target Sequence 
TGGCGGAGAGCTTGTCCTATCTTCACCATGACTGTGTGCCCATGATTATCCATAGAGATGTCAAATCGAGCAACATCCTG
ATGGATGCTGAGCTAGTACCCAAGCTCACAGATTTTGGGATGGGGAAGATCATTGATGATGATGATGCAGACGCGACAGT
GTCTGTCGTTGTTGGCACCCTTGGTTATATTGCTCCAGAGCATGGATACTCCACGAGATTAAGCGAGAAGAGTGATGTAT
ACAGTTATGGAGTAGTGCTTCTTGAACTGTTGTGTCGGAAGATGCCTGTGGATCCTGCATTTGGAGATGGTGTGGACATT
GTGACTTGGATGGGGTCAAATCTGAATCAGGCAGATCACTCCAACATCATGAGGTTCCTGGATGAGGAGATAATATACTG
GCCTGAACATGAGAAGGCGAAGGTGTTGGACTTGTTGGATTTAGCGATGACCTGCACTCAGGTTTCTTGCCAGTTAAGGC
CATCCATGAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis