Browse Element(s) Details


OsAffx.20728.1.S1_at

Description tigr:9638.m00593
TID=OsAffx.20728.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0677011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06740OsAffx.18157.1.S1_at11/1110+3484713..3488266Leucine Rich Repeat family protein, expressed
LOC_Os10g06740OsAffx.26258.3.S1_at1/1110+3484713..3488266Leucine Rich Repeat family protein, expressed
LOC_Os10g06750OsAffx.6591.1.S1_at11/1110+3491204..3496199hypothetical protein
LOC_Os10g06750OsAffx.528.1.S1_at1/1110+3491204..3496199hypothetical protein
LOC_Os10g06760Os.27570.1.S1_at11/1110+3499052..3502794Leucine Rich Repeat family protein, expressed
LOC_Os10g06770OsAffx.20728.1.S1_at11/1110+3509939..3510908hypothetical protein
LOC_Os10g06780OsAffx.30320.2.S1_x_at11/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780OsAffx.30320.1.S1_x_at6/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780Os.46721.1.S1_x_at2/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06790OsAffx.6593.1.S1_at10/1110+3514180..3517404hypothetical protein
LOC_Os10g06790Os.57157.1.S1_at4/1110+3514180..3517404hypothetical protein
LOC_Os10g06790OsAffx.31569.1.S1_x_at1/1110+3514180..3517404hypothetical protein
LOC_Os10g06800OsAffx.30320.1.S1_x_at11/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06800OsAffx.30320.2.S1_x_at6/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06800Os.46721.1.S1_x_at2/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06810OsAffx.20725.2.S1_at11/1110+3535385..3537759hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20728.1.S1_at--1154--5051Chr10:3510754..3510778 (25 bp)
GCAGCTATGGCGTCGTGTACAAGGC
LOC_Os10g06770
OsAffx.20728.1.S1_at--615--8371Chr10:3510746..3510770 (25 bp)
GGCGTCGTGTACAAGGCTCGCGATC
LOC_Os10g06770
OsAffx.20728.1.S1_at--104--7591Chr10:3510367..3510391 (25 bp)
GGGCTTCGCGCGATTTGCGACTTCG
LOC_Os10g06770
OsAffx.20728.1.S1_at--1001--10631Chr10:3510363..3510387 (25 bp)
TTCGCGCGATTTGCGACTTCGGGAT
LOC_Os10g06770
OsAffx.20728.1.S1_at--478--4031Chr10:3510318..3510342 (25 bp)
CGTACGAGCCGTACATGGTCGGCAC
LOC_Os10g06770
OsAffx.20728.1.S1_at--1106--1171Chr10:3510243..3510267 (25 bp)
AGTACGACGCCAAGGTCGTGGACAT
LOC_Os10g06770
OsAffx.20728.1.S1_at--811--971Chr10:3510150..3510174 (25 bp)
AGGAGCACCTCCTGGAGCTGGTGGA
LOC_Os10g06770
OsAffx.20728.1.S1_at--650--7731Chr10:3510131..3510155 (25 bp)
GGTGGAGCTGAGAGACTACGACATC
LOC_Os10g06770
OsAffx.20728.1.S1_at--436--5991Chr10:3510120..3510144 (25 bp)
GAGACTACGACATCGGGTCCAGGAA
LOC_Os10g06770
OsAffx.20728.1.S1_at--952--491Chr10:3510109..3510133 (25 bp)
ATCGGGTCCAGGAACTCGCTGGCGT
LOC_Os10g06770
OsAffx.20728.1.S1_at--639--8331Chr10:3510036..3510060 (25 bp)
GGCTGCTGGCCTTCGACGGCGACAA
LOC_Os10g06770
Target Sequence 
GCAGCTATGGCGTCGTGTACAAGGCTCGCGATCGCCGCACCGGCGAGACGGTCGCCGTCAAGTGGGGCGATGCACCGCGC
CGGCATGGCGCACCGCGACATCAAGCCGGGCAACATCCTCGTCGGCCCGGGCTTCGCGCGATTTGCGACTTCGGGATGGC
CACGACGGCGCCGCCGCCGTACGAGCCGTACATGGTCGGCACGCTCCACTACAACTCGCCGGAGCAGCTCACCGAGAGCG
GGCTGAACGGCAAGTACGACGCCAAGGTCGTGGACATGTGGGCGGCGGGCTGCGTGATGGCCGAGCTCCTCACCGGCGGC
AGAGCGTTCACGTCGGAGACGGCGAAGGAGCACCTCCTGGAGCTGGTGGAGCTGAGAGACTACGACATCGGGTCCAGGAA
CTCGCTGGCGTTCGGCGGCCTGCGGTGGCTGTCGCCGGCGGGGCGCGAGGTGCTCGCTGGGCTGCTGGCCTTCGACGGCG
ACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis