Browse Element(s) Details


OsAffx.6593.1.S1_at

Description tigr:9638.m00595
TID=OsAffx.6593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0679010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06750OsAffx.6591.1.S1_at11/1110+3491204..3496199hypothetical protein
LOC_Os10g06750OsAffx.528.1.S1_at1/1110+3491204..3496199hypothetical protein
LOC_Os10g06760Os.27570.1.S1_at11/1110+3499052..3502794Leucine Rich Repeat family protein, expressed
LOC_Os10g06770OsAffx.20728.1.S1_at11/1110+3509939..3510908hypothetical protein
LOC_Os10g06780OsAffx.30320.2.S1_x_at11/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780OsAffx.30320.1.S1_x_at6/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780Os.46721.1.S1_x_at2/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06790OsAffx.6593.1.S1_at10/1110+3514180..3517404hypothetical protein
LOC_Os10g06790Os.57157.1.S1_at4/1110+3514180..3517404hypothetical protein
LOC_Os10g06790OsAffx.31569.1.S1_x_at1/1110+3514180..3517404hypothetical protein
LOC_Os10g06800OsAffx.30320.1.S1_x_at11/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06800OsAffx.30320.2.S1_x_at6/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06800Os.46721.1.S1_x_at2/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06810OsAffx.20725.2.S1_at11/1110+3535385..3537759hypothetical protein
LOC_Os10g06820NANA10+3542149..3543063retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6593.1.S1_at--412--3212Chr10:10378004..10378028 (25 bp)
CAAGGACTAGAAAATGGCTTCATCT
NONE
OsAffx.6593.1.S1_at--699--4591Chr10:3517159..3517183 (25 bp)
GCGAGCCCCGCCATGTTATGTCCAA
LOC_Os10g06790
OsAffx.6593.1.S1_at--442--711Chr10:3517096..3517120 (25 bp)
ATGATCCATGAGACTGGTGGTGGCA
LOC_Os10g06790
OsAffx.6593.1.S1_at--818--2211NONE
ACAAGGAGTTCGAGGTTCATAATGG
NONE
OsAffx.6593.1.S1_at--43--751Chr10:3514872..3514896 (25 bp)
ATGTTTGGTGTGATAGGGTGCCTCT
LOC_Os10g06790
OsAffx.6593.1.S1_at--185--10091Chr10:3514859..3514883 (25 bp)
TAGGGTGCCTCTGAAGGTTCTTTTC
LOC_Os10g06790
OsAffx.6593.1.S1_at--978--7871Chr10:3514844..3514868 (25 bp)
GGTTCTTTTCCCTGACTTGTATGAG
LOC_Os10g06790
OsAffx.6593.1.S1_at--959--7551Chr10:3514803..3514827 (25 bp)
GGGCCACTGTGAATGATCTGTATGA
LOC_Os10g06790
OsAffx.6593.1.S1_at--459--2731Chr10:3514751..3514775 (25 bp)
AAGAAATCTTAACCCTATGAAGGAG
LOC_Os10g06790
OsAffx.6593.1.S1_at--109--8051Chr10:3514509..3514533 (25 bp)
GGAGATTACCTTGTGCAGAACAACT
LOC_Os10g06790
OsAffx.6593.1.S1_at--637--3151Chr10:3514275..3514480 (25 bp)
AATTCTAAGTGGTGCGCATTGCTCA
LOC_Os10g06790
Target Sequence 
CAAGGACTAGAAAATGGCTTCATCTCTAACGCGAGCCCCGCCATGTTATGTCCAATGCATCAGGAGAGGCTCACTAATAA
GGAGGTCGACGAGATGATCCATGAGACTGGTGGTGGCAGGTGGATCAATTACAAGGAGTTCGAGGTTCATAATGGGAGAA
ATGCATTTTTTTGGAAGGATGTTTGGTGTGATAGGGTGCCTCTGAAGGTTCTTTTCCCTGACTTGTATGAGATTAGCTAT
GATCAGGGGGCCACTGTGAATGATCTGTATGAGGGGGGTGGTTGGAAGCTAGATTTTAGAAGAAATCTTAACCCTATGAA
GGAGAGGGTTAAGGATACTGATATGTGGGAGATTTGGAAGAGCAAATTACCTCTGAAAGTTAAACATTTTCTTTATTTAG
TGGGTAGAGGGAGATTACCTTGTGCAGAACAACTGGTTAAAAGAAAATGGAAGGTGGTGATGAATTCTAAGTGGTGCGCA
TTGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis