Browse Element(s) Details


OsAffx.528.1.S1_at

Description gb:XM_354167.1
DB_XREF= gi:35189767
TID=OsAffx.528.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g067501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06730NANA10+3467607..3468398transposon protein, putative, unclassified
LOC_Os10g06740OsAffx.18157.1.S1_at11/1110+3484713..3488266Leucine Rich Repeat family protein, expressed
LOC_Os10g06740OsAffx.26258.3.S1_at1/1110+3484713..3488266Leucine Rich Repeat family protein, expressed
LOC_Os10g06750OsAffx.6591.1.S1_at11/1110+3491204..3496199hypothetical protein
LOC_Os10g06750OsAffx.528.1.S1_at1/1110+3491204..3496199hypothetical protein
LOC_Os10g06760Os.27570.1.S1_at11/1110+3499052..3502794Leucine Rich Repeat family protein, expressed
LOC_Os10g06770OsAffx.20728.1.S1_at11/1110+3509939..3510908hypothetical protein
LOC_Os10g06780OsAffx.30320.2.S1_x_at11/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780OsAffx.30320.1.S1_x_at6/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780Os.46721.1.S1_x_at2/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06790OsAffx.6593.1.S1_at10/1110+3514180..3517404hypothetical protein
LOC_Os10g06790Os.57157.1.S1_at4/1110+3514180..3517404hypothetical protein
LOC_Os10g06790OsAffx.31569.1.S1_x_at1/1110+3514180..3517404hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.528.1.S1_at--246--1651Chr07:6909484..6909508 (25 bp)
AGCGATGTTCTGCTGCGTACGTCAG
NONE
OsAffx.528.1.S1_at--184--2671Chr07:6909618..6909642 (25 bp)
AAGCGGCAGCCTTTTACGGCAGCGA
NONE
OsAffx.528.1.S1_at--370--5071Chr07:6909636..6909658 (23 bp)
GCAGCGACGACCAGCAGGTTATGCT
NONE
OsAffx.528.1.S1_at--479--6791Chr07:6910763..6910782 (20 bp)
GTTATGCTGTGGATGGACCGGTCAA
NONE
OsAffx.528.1.S1_at--782--1871Chr07:6910800..6910824 (25 bp)
ACGAGTTCTTCGGTGCTGTCAGAGA
NONE
OsAffx.528.1.S1_at--388--1351Chr07:6910820..6910844 (25 bp)
AGAGATGAGCGTTTCCTGCGTAGTG
NONE
OsAffx.528.1.S1_at--1045--7991Chr07:6910851..6910875 (25 bp)
GGATGTGCAATTCTCTCAAATGTTG
NONE
OsAffx.528.1.S1_at--326--10751Chr07:6911194..6911218 (25 bp)
TTGAATCTGTTGTTAGTGTCGCCGC
NONE
OsAffx.528.1.S1_at--767--10431Chr07:6911206..6911230 (25 bp)
TTAGTGTCGCCGCTTATATCGTTTT
NONE
OsAffx.528.1.S1_at--581--10191Chr07:6911220..6911244 (25 bp)
TATATCGTTTTCTCTCGCTGTATCT
NONE
OsAffx.528.1.S1_at--447--2532Chr10:3491703..3491727 (25 bp)
AACTCGATTCGGCAACTGACCTTCG
LOC_Os10g06750
Target Sequence 
AGCGATGTTCTGCTGCGTACGTCAGCTGTGACCGGCGGGCGCTACGGGCGCGCGCGTACGGCAGCAGCGAGCGGCGGGCG
TGTGCGGCCTCGGCAAGCGGCAGCCTTTTACGGCAGCGACGACCAGCAGGTTATGCTGTGGATGGACCGGTCAAAGGTGA
GGTCATCCATGACGAGTTCTTCGGTGCTGTCAGAGATGAGCGTTTCCTGCGTAGTGTTAGGTGGATGTGCAATTCTCTCA
AATGTTGAAATGCTGTTGAATCTGTTGTTAGTGTCGCCGCTTATATCGTTTTCTCTCGCTGTATCTCTACGCACCTACAC
CGGCGGCGGTGCCAACTCGATTCGGCAACTGACCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis