Browse Element(s) Details


OsAffx.6591.1.S1_at

Description tigr:9638.m00591
TID=OsAffx.6591.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0675011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06730NANA10+3467607..3468398transposon protein, putative, unclassified
LOC_Os10g06740OsAffx.18157.1.S1_at11/1110+3484713..3488266Leucine Rich Repeat family protein, expressed
LOC_Os10g06740OsAffx.26258.3.S1_at1/1110+3484713..3488266Leucine Rich Repeat family protein, expressed
LOC_Os10g06750OsAffx.6591.1.S1_at11/1110+3491204..3496199hypothetical protein
LOC_Os10g06750OsAffx.528.1.S1_at1/1110+3491204..3496199hypothetical protein
LOC_Os10g06760Os.27570.1.S1_at11/1110+3499052..3502794Leucine Rich Repeat family protein, expressed
LOC_Os10g06770OsAffx.20728.1.S1_at11/1110+3509939..3510908hypothetical protein
LOC_Os10g06780OsAffx.30320.2.S1_x_at11/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780OsAffx.30320.1.S1_x_at6/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780Os.46721.1.S1_x_at2/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06790OsAffx.6593.1.S1_at10/1110+3514180..3517404hypothetical protein
LOC_Os10g06790Os.57157.1.S1_at4/1110+3514180..3517404hypothetical protein
LOC_Os10g06790OsAffx.31569.1.S1_x_at1/1110+3514180..3517404hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6591.1.S1_at--128--6291Chr10:3494440..3494464 (25 bp)
GATGTTTCATTCAAAGCTAGATCTG
LOC_Os10g06750
OsAffx.6591.1.S1_at--231--2711Chr10:3494453..3494477 (25 bp)
AAGCTAGATCTGATAATTTTTCATC
LOC_Os10g06750
OsAffx.6591.1.S1_at--251--6411Chr10:3494459..3494481 (23 bp)
GATCTGATAATTTTTCATCTAAGAG
LOC_Os10g06750
OsAffx.6591.1.S1_at--948--2331Chr10:3495885..3495909 (25 bp)
AAAGAACTGAATCAACAGTTGTTGA
LOC_Os10g06750
OsAffx.6591.1.S1_at--329--351Chr10:3495918..3495942 (25 bp)
ATAAGTTGGATTCATCTTTACTTGA
LOC_Os10g06750
OsAffx.6591.1.S1_at--21--6631Chr10:3495922..3495946 (25 bp)
GTTGGATTCATCTTTACTTGAAATA
LOC_Os10g06750
OsAffx.6591.1.S1_at--343--2431Chr10:3495976..3496000 (25 bp)
AAGAAAACTCTACTGTCATAAAACA
LOC_Os10g06750
OsAffx.6591.1.S1_at--695--7951Chr10:3496109..3496133 (25 bp)
GGATACAACATATGATACTAAGCTC
LOC_Os10g06750
OsAffx.6591.1.S1_at--1002--251Chr10:3496118..3496142 (25 bp)
ATATGATACTAAGCTCACTAGACTT
LOC_Os10g06750
OsAffx.6591.1.S1_at--730--4831Chr10:3496130..3496154 (25 bp)
GCTCACTAGACTTTCTGTGAAGTAT
LOC_Os10g06750
OsAffx.6591.1.S1_at--1125--5671Chr10:3496138..3496162 (25 bp)
GACTTTCTGTGAAGTATTTTTCTCA
LOC_Os10g06750
Target Sequence 
GATGTTTCATTCAAAGCTAGATCTGATAATTTTTCATCTAAGAGGAAAAGAACTGAATCAACAGTTGTTGATTTCAAAAA
TAAGTTGGATTCATCTTTACTTGAAATATATAGAGATAATGTTTTGATTGGTATGAAAAGAAAACTCTACTGTCATAAAA
CAAAGAAAAATTCAATGAAGAAGGATACAACATATGATACTAAGCTCACTAGACTTTCTGTGAAGTATTTTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis