Browse Element(s) Details


Os.27570.1.S1_at

Description gb:AK120029.1
DB_XREF= gi:37989652
TID=Os.27570.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0004E08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-D05, full insert sequence.
FL= gb:AK120029.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0676011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06740OsAffx.18157.1.S1_at11/1110+3484713..3488266Leucine Rich Repeat family protein, expressed
LOC_Os10g06740OsAffx.26258.3.S1_at1/1110+3484713..3488266Leucine Rich Repeat family protein, expressed
LOC_Os10g06750OsAffx.6591.1.S1_at11/1110+3491204..3496199hypothetical protein
LOC_Os10g06750OsAffx.528.1.S1_at1/1110+3491204..3496199hypothetical protein
LOC_Os10g06760Os.27570.1.S1_at11/1110+3499052..3502794Leucine Rich Repeat family protein, expressed
LOC_Os10g06770OsAffx.20728.1.S1_at11/1110+3509939..3510908hypothetical protein
LOC_Os10g06780OsAffx.30320.2.S1_x_at11/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780OsAffx.30320.1.S1_x_at6/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780Os.46721.1.S1_x_at2/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06790OsAffx.6593.1.S1_at10/1110+3514180..3517404hypothetical protein
LOC_Os10g06790Os.57157.1.S1_at4/1110+3514180..3517404hypothetical protein
LOC_Os10g06790OsAffx.31569.1.S1_x_at1/1110+3514180..3517404hypothetical protein
LOC_Os10g06800OsAffx.30320.1.S1_x_at11/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06800OsAffx.30320.2.S1_x_at6/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06800Os.46721.1.S1_x_at2/1110+3522061..3523038Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27570.1.S1_at--538--6491Chr10:3502221..3502245 (25 bp)
GATTAACCGAAAAGAGCGACGTCTA
LOC_Os10g06760
Os.27570.1.S1_at--96--4011Chr10:3502240..3502264 (25 bp)
CGTCTACAGCTACGGAGTAGTGCTA
LOC_Os10g06760
Os.27570.1.S1_at--334--9091Chr10:3502260..3502284 (25 bp)
TGCTACTTGAGCTCCTGTGCAGGAA
LOC_Os10g06760
Os.27570.1.S1_at--304--6311Chr10:3502333..3502357 (25 bp)
GATGAGATCGAACCTGACGCAGGCA
LOC_Os10g06760
Os.27570.1.S1_at--1091--8031Chr10:3502390..3502414 (25 bp)
GGAGATCATGTACTGGCCTGAAGAT
LOC_Os10g06760
Os.27570.1.S1_at--386--2311Chr10:3502423..3502447 (25 bp)
AAAGGCACTGGACTTGCTGGACCTG
LOC_Os10g06760
Os.27570.1.S1_at--980--4711Chr10:3502438..3502462 (25 bp)
GCTGGACCTGGCCATGTACTGCACA
LOC_Os10g06760
Os.27570.1.S1_at--250--7011Chr10:3502453..3502477 (25 bp)
GTACTGCACACAATTGGCTTGCCAG
LOC_Os10g06760
Os.27570.1.S1_at--420--6531Chr10:3502543..3502567 (25 bp)
GATTTTAACAACATTCCGAGGCCGA
LOC_Os10g06760
Os.27570.1.S1_at--764--7871Chr10:3502562..3502586 (25 bp)
GGCCGAAAAGTTATCTCCTAAATAG
LOC_Os10g06760
Os.27570.1.S1_at--900--3151Chr10:3502725..3502749 (25 bp)
AATTCTGGCCTCAAGTTATGCTGTA
LOC_Os10g06760
Target Sequence 
GATTAACCGAAAAGAGCGACGTCTACAGCTACGGAGTAGTGCTACTTGAGCTCCTGTGCAGGAAGATGCCTGTGGATCCT
GCATTCGGGGACAGTGTGGACATTGTGACATGGATGAGATCGAACCTGACGCAGGCAGATCGCCGCGTCATCATGGAATG
CCTCGATGAGGAGATCATGTACTGGCCTGAAGATGAGCAGGCAAAGGCACTGGACTTGCTGGACCTGGCCATGTACTGCA
CACAATTGGCTTGCCAGTCAAGACCTTCCATGAGGGAAGTTGTGAACAATCTAATGAGGATGGACAAGTAAAGAAATGTG
AAGATTTTAACAACATTCCGAGGCCGAAAAGTTATCTCCTAAATAGCTTACATGTAGAAATGCAACTCTAGAGTTGATAC
AAATGTTTCTTCAGAATTTTGTCAGACACTTAAAATTTTCAGTTATCTATAGGGAAAAATAATTACAGTGTTATACTAGA
ATATGATTGTATTAGTATCATAGAAATTCTGGCCTCAAGTTATGCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis