Browse Element(s) Details


Os.57157.1.S1_at

Description gb:AK111040.1
DB_XREF= gi:32996249
TID=Os.57157.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57157 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-B03, full insert sequence.
FL= gb:AK111040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g067904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06750OsAffx.6591.1.S1_at11/1110+3491204..3496199hypothetical protein
LOC_Os10g06750OsAffx.528.1.S1_at1/1110+3491204..3496199hypothetical protein
LOC_Os10g06760Os.27570.1.S1_at11/1110+3499052..3502794Leucine Rich Repeat family protein, expressed
LOC_Os10g06770OsAffx.20728.1.S1_at11/1110+3509939..3510908hypothetical protein
LOC_Os10g06780OsAffx.30320.2.S1_x_at11/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780OsAffx.30320.1.S1_x_at6/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06780Os.46721.1.S1_x_at2/1110+3511322..3512248Protein kinase domain containing protein
LOC_Os10g06790OsAffx.6593.1.S1_at10/1110+3514180..3517404hypothetical protein
LOC_Os10g06790Os.57157.1.S1_at4/1110+3514180..3517404hypothetical protein
LOC_Os10g06790OsAffx.31569.1.S1_x_at1/1110+3514180..3517404hypothetical protein
LOC_Os10g06800OsAffx.30320.1.S1_x_at11/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06800OsAffx.30320.2.S1_x_at6/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06800Os.46721.1.S1_x_at2/1110+3522061..3523038Protein kinase domain containing protein
LOC_Os10g06810OsAffx.20725.2.S1_at11/1110+3535385..3537759hypothetical protein
LOC_Os10g06820NANA10+3542149..3543063retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57157.1.S1_at--370--2351Chr10:3601976..3602000 (25 bp)
AAAGCACAAAGGCATGCGCTCCTGA
NONE
Os.57157.1.S1_at--637--9151Chr10:3601990..3602014 (25 bp)
TGCGCTCCTGAAGATGCCATGTGTA
NONE
Os.57157.1.S1_at--1056--10291Chr10:3602067..3602091 (25 bp)
TTTCGAGATGAGTAGTTTGCTGATT
NONE
Os.57157.1.S1_at--268--10291Chr10:3602082..3602106 (25 bp)
TTTGCTGATTACTTGGTAGTGTGGT
NONE
Os.57157.1.S1_at--307--8672Chr10:3602101..3602125 (25 bp)
TGTGGTTGATGGTTTGTGATCCTCA
NONE
Os.57157.1.S1_at--11--551Chr10:3602119..3602143 (25 bp)
ATCCTCAAGAGGGTTTATATTTATA
NONE
Os.57157.1.S1_at--1114--2133Chr10:3602173..3602197 (25 bp)
ACAGCAGTTCATGATTAGTCAATTC
NONE
Os.57157.1.S1_at--1144--7073Chr10:3602190..3602214 (25 bp)
GTCAATTCAGATTCAGTCATGGCTA
NONE
Os.57157.1.S1_at--1017--1151Chr10:3602204..3602228 (25 bp)
AGTCATGGCTAGCTCTCCTGCATGT
NONE
Os.57157.1.S1_at--36--9512Chr10:3602217..3602241 (25 bp)
TCTCCTGCATGTACGTCTGTCTAAT
NONE
Os.57157.1.S1_at--632--6993Chr10:3602227..3602251 (25 bp)
GTACGTCTGTCTAATCGTTCTTTTT
NONE
Target Sequence 
AAAGCACAAAGGCATGCGCTCCTGAAGATGCCATGTGTATACAGGAGATGATGATGATGATGATGCGAAGAGAAGATTAA
GAGTAAATGGATTTCGAGATGAGTAGTTTGCTGATTACTTGGTAGTGTGGTTGATGGTTTGTGATCCTCAAGAGGGTTTA
TATTTATATACATTATGCAGAACAGAGACTAAGTAAGACAGCAGTTCATGATTAGTCAATTCAGATTCAGTCATGGCTAG
CTCTCCTGCATGTACGTCTGTCTAATCGTTCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis