Browse Element(s) Details


Os.7292.1.S1_at

Description gb:AK101862.1
DB_XREF= gi:32987071
TID=Os.7292.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative conserved oligomeric Golgi complex component (OSJNBb0096M04.45), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070C05, full insert sequence.
FL= gb:AK101862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6325011/11brefeldin A-sensitive Golgi protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63200Os.44928.1.S1_at11/113+35650256..35654709powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63210OsAffx.25807.1.S1_at11/113+35657592..35658741hypothetical protein
LOC_Os03g63210Os.52410.1.S1_x_at1/113+35657592..35658741hypothetical protein
LOC_Os03g63220Os.44928.1.S1_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63220Os.35787.1.S1_x_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63230OsAffx.22641.1.S1_at11/113+35666801..35668212retrotransposon protein, putative, LINE subclass
LOC_Os03g63240Os.49396.1.S1_x_at1/113+35668814..35671051NB-ARC domain containing protein, expressed
LOC_Os03g63250Os.7292.1.S1_at11/113+35675018..35680540brefeldin A-sensitive Golgi protein, putative, expressed
LOC_Os03g63260Os.44933.1.S1_at11/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.44933.2.S1_x_at10/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63260Os.22353.3.S1_x_at2/113+35680764..35687107pentatricopeptide, putative, expressed
LOC_Os03g63270Os.27955.2.S1_x_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.2.S1_at11/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S1_at10/113+35692302..35696744regulatory protein, putative, expressed
LOC_Os03g63270Os.27955.1.S2_at9/113+35692302..35696744regulatory protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7292.1.S1_at--456--6491Chr03:35675798..35675822 (25 bp)
GATACCTCGGATAACATCATTTCTG
LOC_Os03g63250
Os.7292.1.S1_at--632--2511Chr03:35675321..35675345 (25 bp)
AACATTCAGAGCTTTATGGCAGTGT
LOC_Os03g63250
Os.7292.1.S1_at--264--1431Chr03:35675231..35675255 (25 bp)
AGAAAATTGCCTTAGGTCCCTCAAT
LOC_Os03g63250
Os.7292.1.S1_at--296--10071Chr03:35675219..35675243 (25 bp)
TAGGTCCCTCAATATCCGTAGATAC
LOC_Os03g63250
Os.7292.1.S1_at--972--6531Chr03:35675159..35675183 (25 bp)
GATTTTTATACATAGAGCTCTGGAT
LOC_Os03g63250
Os.7292.1.S1_at--1090--6592Chr01:35750353..35750372 (20 bp)
GATTGTTTCATTTTGGACGGTCTCC
NONE
Os.7292.1.S1_at--545--7791Chr03:35675113..35675137 (25 bp)
GGTCTCCTCCGGATTATACAAGGGT
LOC_Os03g63250
Os.7292.1.S1_at--749--9831Chr03:35675097..35675121 (25 bp)
TACAAGGGTCAAGGGTACATCCAAA
LOC_Os03g63250
Os.7292.1.S1_at--235--5331Chr03:35675066..35675090 (25 bp)
GAAGTGTATCAAACCTCATGTTGTT
LOC_Os03g63250
Os.7292.1.S1_at--567--6631Chr03:35675047..35675071 (25 bp)
GTTGTTGGAAACACACCGATTCTGT
LOC_Os03g63250
Os.7292.1.S1_at--526--2191Chr03:35675037..35675061 (25 bp)
ACACACCGATTCTGTTGAAAGATTG
LOC_Os03g63250
Target Sequence 
GATACCTCGGATAACATCATTTCTGATACTGACAAGATCTGCATGCAGCTATTTCTTGACATTCAGGAATATGCACGGAA
TCTTCGTGCAATAGGAATAGATGCAAGGGAAATCGAAACATTCAGAGCTTTATGGCAGTGTGTTGCTCCTAGAGACAAAC
AGGATAACATCCAGTTTTGATGTAAAGATCAATTTGAGTACATAGAAGAAAATTGCCTTAGGTCCCTCAATATCCGTAGA
TACGTCTCGTGTTGTTCGTTTAGGATGGATGTTGGAATGATTTTTATACATAGAGCTCTGGATTTTGATTGTTTCATTTT
GGACGGTCTCCTCCGGATTATACAAGGGTCAAGGGTACATCCAAAATTTGAGAAGTGTATCAAACCTCATGTTGTTGGAA
ACACACCGATTCTGTTGAAAGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis