Browse Element(s) Details


Os.7304.1.S1_at

Description gb:AK069537.1
DB_XREF= gi:32979561
TID=Os.7304.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7304 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (B1015E06.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019I05, full insert sequence.
FL= gb:AK069537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1045011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10410Os.55650.1.A1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.22143.1.S1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.21756.5.A1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410Os.7307.3.S1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10420OsAffx.22143.2.S1_at11/111+5487425..5488162hypothetical protein
LOC_Os01g10430Os.27867.1.S1_at11/111+5490191..5496183Cell division-related protein, putative, expressed
LOC_Os01g10440Os.45991.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440Os.18296.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440OsAffx.13408.1.S1_x_at1/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10450Os.7304.1.S1_at11/111+5507324..5511272protein kinase, putative, expressed
LOC_Os01g10460OsAffx.10996.1.A1_at11/111+5527299..5530411expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7304.1.S1_at--647--4951Chr01:5507996..5508020 (25 bp)
GCATACAACCGGAAGGTCGACGTCT
LOC_Os01g10450
Os.7304.1.S1_at--776--291Chr01:5507971..5507995 (25 bp)
ATAGCTTTGGACTACTCCTATGGGA
LOC_Os01g10450
Os.7304.1.S1_at--479--8191Chr01:5507936..5507960 (25 bp)
GGAAGAATTCCTTTCGATGACTTAA
LOC_Os01g10450
Os.7304.1.S1_at--667--91Chr01:5507753..5507777 (25 bp)
ATTCCTCCAGAATGTCCAATGGCTC
LOC_Os01g10450
Os.7304.1.S1_at--849--6191Chr01:5507651..5507675 (25 bp)
GAGGAATTTCATTCTGTTCTCTCCC
LOC_Os01g10450
Os.7304.1.S1_at--257--111Chr01:5507641..5507665 (25 bp)
ATTCTGTTCTCTCCCAAGGTGGCTG
LOC_Os01g10450
Os.7304.1.S1_at--1144--2351Chr01:5507577..5507601 (25 bp)
AAAGCGACTTCTGCATTGGATTCAA
LOC_Os01g10450
Os.7304.1.S1_at--247--2031Chr01:5507538..5507562 (25 bp)
ACATAGCACCTGAGTTCCTGTAGTC
LOC_Os01g10450
Os.7304.1.S1_at--659--4411Chr01:5507498..5507522 (25 bp)
GCCAGATGTTTTTATCCGGTTCTGT
LOC_Os01g10450
Os.7304.1.S1_at--685--551Chr01:5507485..5507509 (25 bp)
ATCCGGTTCTGTATGCTCAGTAGCT
LOC_Os01g10450
Os.7304.1.S1_at--596--9091Chr01:5507342..5507366 (25 bp)
TGCTCTCTTCTCTGTTTTTGTGAAA
LOC_Os01g10450
Target Sequence 
GCATACAACCGGAAGGTCGACGTCTATAGCTTTGGACTACTCCTATGGGAAATGATCTCTGGAAGAATTCCTTTCGATGA
CTTAACCCCTCTCNNNNNNNCTNNNNNTNTNNNNNNTNNGCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTC
TGAGACCGTTGATCGAACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGCAGATTGTTAAAATCCTGGAG
GAATTTCATTCTGTTCTCTCCCAAGGTGGCTGCCTCGACTCACTNAAGAGCAGCAACAGCCAGGATCAGAAAAAGCGACT
TCTGCATTGGATTCAAAAGCTGAAACCCTCACATAGCACCTGAGTTCCTGTAGTCTCTAGNATCCTTTCTGCCAGATGTT
TTTATCCGGTTCTGTATGCTCAGTAGCTTAGCATNAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGGAT
GCTTGGACATGTTTATCAGGTGAATTGCAAGTAGGTTTACAGTACCTGTATATTGTGCTACCCTTCTGCTCTCTTCTCTG
TTTTTGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis