Browse Element(s) Details


Os.7322.1.S1_at

Description gb:D43058
DB_XREF= gi:3107318
DB_XREF=D43058
CLONE=AD477
TID=Os.7322.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative No apical meristem protein (OJ1341F06.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2273011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22680OsAffx.30502.1.S1_x_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.30502.1.S1_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.22642.1.S1_x_at1/1110+11451129..11451915hypothetical protein
LOC_Os10g22690Os.52765.1.S1_at4/1110+11453165..11455525hypothetical protein
LOC_Os10g22700OsAffx.20433.1.S1_x_at11/1110+11460867..11461716expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_x_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.28845.1.S1_x_at1/1110+11464845..11466882expressed protein
LOC_Os10g22720OsAffx.30503.1.S1_at11/1110+11469998..11473960hypothetical protein
LOC_Os10g22730Os.7322.1.S1_at11/1110+11475856..11481847expressed protein
LOC_Os10g22730Os.52023.1.S1_at10/1110+11475856..11481847expressed protein
LOC_Os10g22740OsAffx.8205.1.S1_at11/1110+11491121..11492666hypothetical protein
LOC_Os10g22750Os.46834.1.S1_at11/1110+11494547..11495515expressed protein
LOC_Os10g22760OsAffx.222.1.S1_at11/1110+11498343..11499747transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g22770OsAffx.31801.1.S1_at9/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.28844.1.S1_at5/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.31801.4.S1_at1/1110+11504486..11506836hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7322.1.S1_at--450--1811Chr10:11476409..11476518 (25 bp)
ACCCTCAGGCTCAGTCCACAGAAAG
LOC_Os10g22730
Os.7322.1.S1_at--795--2911Chr10:11476248..11476272 (25 bp)
AAGGAGCACATATTTCTGACGAAGA
LOC_Os10g22730
Os.7322.1.S1_at--654--2311Chr10:11476189..11476213 (25 bp)
AAAGGTGCTCATTGCTAGTTTCCGG
LOC_Os10g22730
Os.7322.1.S1_at--477--4811Chr10:11476183..11476207 (25 bp)
GCTCATTGCTAGTTTCCGGGTAACA
LOC_Os10g22730
Os.7322.1.S1_at--584--1951Chr10:11476158..11476182 (25 bp)
ACTGGTTACTTCAGGTTGCTACCTC
LOC_Os10g22730
Os.7322.1.S1_at--818--71Chr10:11476119..11476143 (25 bp)
ATTCCAGAAGAAGATCCCCAATATG
LOC_Os10g22730
Os.7322.1.S1_at--539--2311Chr10:11476083..11476107 (25 bp)
AAAGGTAATCCCTGTTCTCATTGTG
LOC_Os10g22730
Os.7322.1.S1_at--595--5751Chr10:11476032..11476056 (25 bp)
GACGGTGAATGTTATCTGATCTATC
LOC_Os10g22730
Os.7322.1.S1_at--188--3731Chr10:11476008..11476032 (25 bp)
CTAAATTCATATGGGACTTCCTGGG
LOC_Os10g22730
Os.7322.1.S1_at--1049--7611Chr10:11475985..11476009 (25 bp)
GGGACATGACGGATTCGGTAGAATA
LOC_Os10g22730
Os.7322.1.S1_at--57--1591Chr10:11475931..11475955 (25 bp)
AGCTCAGGTCTAAACTTTGCGTGTA
LOC_Os10g22730
Target Sequence 
ACCCTCAGGCTCAGTCCACAGAAAGATACAAAATCAAACAATACGAAGAGCTCAATCTTGAGATTGCGATGAGGGAACGT
GATANGGAAGAAGTAAGCATTGTTGACAAGAAGTGTATAGGAAAGAAGAAAAAAAGGAGGTTCAGAAAAAAGATGAGAAT
GAAGGAGCACATATTTCTGACGAAGATAAAGAAAGTTATTGAGAGCCATATAATGGATGGAAAGGTGCTCATTGCTAGTT
TCCGGGTAACAACTGGTTACTTCAGGTTGCTACCTCATCAAATCTACAAAATTCCAGAAGAAGATCCCCAATATGAATTG
AATAAAAAAGGTAATCCCTGTTCTCATTGTGTCGTTGTTGTTGGTTTTGGGATTCGGGACGGTGAATGTTATCTGATCTA
TCTAAATTCATATGGGACTTCCTGGGGACATGACGGATTCGGTAGAATATACCTTGATAGTGTCAGGAAGCTTTTTTTAG
CTCAGGTCTAAACTTTGCGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis