Browse Element(s) Details


Os.7347.1.S1_at

Description gb:AK108121.1
DB_XREF= gi:32993330
TID=Os.7347.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7347 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-C12, full insert sequence.
FL= gb:AK108121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6216011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62100OsAffx.13578.1.S1_at11/113+35128356..35129480Myb-like DNA-binding domain containing protein
LOC_Os03g62110Os.16788.1.S1_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.49772.1.S1_s_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.57290.1.S1_at10/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62120OsAffx.13579.1.S1_at11/113+35137617..35140311DnaJ domain containing protein
LOC_Os03g62130OsAffx.13580.1.S1_at11/113+35141491..35142321DnaJ domain containing protein
LOC_Os03g62140OsAffx.3669.1.S1_at11/113+35144660..35145523DnaJ domain containing protein
LOC_Os03g62150OsAffx.13581.1.S1_at11/113+35146476..35147264DnaJ domain containing protein
LOC_Os03g62160Os.7347.1.S1_at11/113+35147432..35150284expressed protein
LOC_Os03g62160Os.17465.1.S1_x_at1/113+35147432..35150284expressed protein
LOC_Os03g62170Os.24911.1.S1_at10/113+35151821..35157202Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os03g62180Os.18773.1.S1_at10/113+35158306..35161738lectin protein kinase family protein, putative, expressed
LOC_Os03g62190Os.14919.1.S1_at6/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190Os.56216.1.S1_at2/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190OsAffx.29313.1.S1_at1/113+35163898..35169876transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7347.1.S1_at--73--1471Chr03:35148110..35148134 (25 bp)
AGAAGGCTACTCTGTCTGAACTCGA
LOC_Os03g62160
Os.7347.1.S1_at--979--2271Chr03:35147881..35147905 (25 bp)
AAATCCATTGTCAACCTTCGCAAGT
LOC_Os03g62160
Os.7347.1.S1_at--384--6311Chr03:35147812..35147836 (25 bp)
GATGACTGAAACTGCTGTTGCCAAA
LOC_Os03g62160
Os.7347.1.S1_at--376--811Chr03:35147787..35147811 (25 bp)
ATGGTCCTTTTAGAACGCCGTGGAT
LOC_Os03g62160
Os.7347.1.S1_at--181--1031Chr03:35147684..35147708 (25 bp)
AGGTACCACATCATCCGTTATTTTG
LOC_Os03g62160
Os.7347.1.S1_at--464--6731Chr03:35147653..35147677 (25 bp)
GTTCATTGGGTTAGGCGGTTCCATC
LOC_Os03g62160
Os.7347.1.S1_at--755--3011Chr03:35147618..35147642 (25 bp)
AATGCATCTTGGTCGATTCAACAGC
LOC_Os03g62160
Os.7347.1.S1_at--487--1251Chr03:35147583..35147607 (25 bp)
AGATTGTTTAACCTCTTTGGCCTGA
LOC_Os03g62160
Os.7347.1.S1_at--1026--3671Chr03:35147569..35147593 (25 bp)
CTTTGGCCTGATTTTCCTTCTTATA
LOC_Os03g62160
Os.7347.1.S1_at--228--7071Chr03:35147539..35147563 (25 bp)
GTAAGTCATAACCAGTAGCTCGCTA
LOC_Os03g62160
Os.7347.1.S1_at--121--6971Chr03:35147525..35147549 (25 bp)
GTAGCTCGCTAAACTTACTTGTCAA
LOC_Os03g62160
Target Sequence 
AGAAGGCTACTCTGTCTGAACTCGAGAAAACATTTTCAGAGAAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAG
CAGGATGACAAATCCATTGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGCAGACGA
TGACTGAAACTGCTGTTGCCAAAATGGTCCTTTTAGAACGCCGTGGATAGTATTTGAGAATATCGATAGTATATATATGA
ACAGAAGTTACAAAGTTCTGTAGAGATTTGGTAGCATCATACAGTTAGGTACCACATCATCCGTTATTTTGTTTTAAGTT
CATTGGGTTAGGCGGTTCCATCATCTGTTTTAAATGCATCTTGGTCGATTCAACAGCAAGAGGCTCAAGATTGTTTAACC
TCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAACCAGTAGCTCGCTAAACTTACTTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis