Browse Element(s) Details


Os.7364.1.S1_at

Description gb:AK061821.1
DB_XREF= gi:32971839
TID=Os.7364.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.7364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023033F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B11, full insert sequence.
FL= gb:AK061821.1 gb:AK099102.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2316011/11Annexin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23130OsAffx.1647.1.S1_at1/119+13678419..13680897retrotransposon protein, putative, unclassified
LOC_Os09g23130OsAffx.20565.1.S1_at1/119+13678419..13680897retrotransposon protein, putative, unclassified
LOC_Os09g23140Os.52158.1.S1_at11/119+13687244..13689946Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os09g23150Os.1852.1.S1_at11/119+13694424..13698811hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g23150OsAffx.15036.1.S1_s_at1/119+13694424..13698811hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g23160Os.7364.1.S1_at11/119+13705540..13710508Annexin family protein, expressed
LOC_Os09g23160OsAffx.18530.1.S1_at1/119+13705540..13710508Annexin family protein, expressed
LOC_Os09g23170OsAffx.29980.1.S1_at11/119+13711161..13712159hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015774biological_processpolysaccharide transport
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
GO:0005544molecular_functioncalcium-dependent phospholipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7364.1.S1_at--177--9191Chr09:13708509..13708533 (25 bp)
TGCCTCTGCTTACCATCATATGTAT
LOC_Os09g23160
Os.7364.1.S1_at--190--3891Chr09:13708658..13708682 (25 bp)
CTGGAAACTTTGAACTTGCTCTGCT
LOC_Os09g23160
Os.7364.1.S1_at--405--9091Chr09:13708679..13708703 (25 bp)
TGCTAACTATCCTCAGATGCGCTGA
LOC_Os09g23160
Os.7364.1.S1_at--282--9991Chr09:13710084..13710108 (25 bp)
TAGCTGAAGCTATCCATTCCGAGAC
LOC_Os09g23160
Os.7364.1.S1_at--214--2071Chr09:13710125..13710149 (25 bp)
ACATTCCTCCTTTCTCTAGTTGGTA
LOC_Os09g23160
Os.7364.1.S1_at--815--131Chr09:13710261..13710284 (24 bp)
ATTAGGCTACATTTCGTCGACCCTG
LOC_Os09g23160
Os.7364.1.S1_at--1139--2051Chr09:13710289..13710313 (25 bp)
ACTTGACGTTCCATGACTATCCTAA
LOC_Os09g23160
Os.7364.1.S1_at--879--3011Chr09:13710313..13710337 (25 bp)
AATGCAGTGGTTCTACCTGGAAACT
LOC_Os09g23160
Os.7364.1.S1_at--389--2451Chr09:13710340..13710364 (25 bp)
AAAATTTCGCCATCATTGTGCTCTC
LOC_Os09g23160
Os.7364.1.S1_at--522--431Chr09:13710351..13710375 (25 bp)
ATCATTGTGCTCTCTATTCGTGTGT
LOC_Os09g23160
Os.7364.1.S1_at--219--471Chr09:13710450..13710474 (25 bp)
ATCTGACAAGTCACTCGTTACTCGG
LOC_Os09g23160
Target Sequence 
TGCCTCTGCTTACCATCATATGTATGATCGGTCACTGGAGAAGGTTGTGAAGAGCGAAACATCTGGAAACTTTGAACTTG
CTCTGCTAACTATCCTCAGATGCGCTGAGAATCCAGCCAAGTATTTTGCAAAGGTCTTGCGGAAGTCCATGAAAGGTATG
GGCACTGATGATAGTACACTTATAAGGGTTGTAGTAACAAGGACTGAGATCGACATGCAATATATCAAGGCTGAGTACTA
CAAGAAATACNAAAAATCATTAGCTGAAGCTATCCATTCCGAGACCTCAGGAAATTATCGAACATTCCTCCTTTCTCTAG
TTGGTAGCCATTAGGCTACATTTCGTCGACCCTGTGGCACTTGACGTTCCATGACTATCCTAAATGCAGTGGTTCTACCT
GGAAACTGTAAAATTTCGCCATCATTGTGCTCTCTATTCGTGTGTGNNCTTGCTTAAAAATGTGTGTATATATATAACCT
GGGCATTAAATAGTTGGTGCTTAATATGGTTTGGTGGTTCCATCTGACAAGTCACTCGTTACTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis