Browse Element(s) Details


Os.7395.1.S1_s_at

Description gb:AK099730.1
DB_XREF= gi:32984939
TID=Os.7395.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089M16, full insert sequence.
FL= gb:AK099730.1 gb:AK061785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7269011/11ATP-NAD kinase family protein, putative, expressed
LOC_Os06g503601/11pseudouridine synthase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72650Os.8818.2.S1_x_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72650Os.8818.1.S1_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72660OsAffx.11831.1.S1_at11/111+42487651..42488127hypothetical protein
LOC_Os01g72670Os.38326.1.A1_a_at11/111+42489440..42493310expressed protein
LOC_Os01g72680OsAffx.11832.1.S1_at11/111+42496260..42499052NB-ARC domain containing protein
LOC_Os01g72690Os.7395.1.S1_s_at11/111+42504684..42510567ATP-NAD kinase family protein, putative, expressed
LOC_Os01g72700Os.43021.1.S1_at11/111+42511088..42514530leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72710Os.53589.1.S1_at11/111+42517337..42520727expressed protein
LOC_Os01g72720OsAffx.11833.1.S1_at11/111+42525955..42527180hypothetical protein
LOC_Os01g72730OsAffx.11834.1.S1_s_at11/111+42529295..42530743expressed protein
LOC_Os01g72730OsAffx.11834.1.S1_at11/111+42529295..42530743expressed protein
LOC_Os01g72740Os.37328.1.S1_at11/111+42533152..42535358Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019363biological_processpyridine nucleotide biosynthesis
GO:0003951molecular_functionNAD+ kinase activity
GO:0004730molecular_functionpseudouridylate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7395.1.S1_s_at--404--2811Chr01:42509978..42510002 (25 bp)
AAGATCGGAAGCTGCTGTCACCCGG
LOC_Os01g72690
Os.7395.1.S1_s_at--993--1931Chr01:42510043..42510067 (25 bp)
ACGGCTTGCCTGGTGGATTCAACAA
LOC_Os01g72690
Os.7395.1.S1_s_at--1101--6551Chr01:42510058..42510082 (25 bp)
GATTCAACAACCGATTTCCTACGCA
LOC_Os01g72690
Os.7395.1.S1_s_at--372--8871Chr01:42510110..42510134 (25 bp)
TGAGGAAGTCCCAGTCATTCGACGG
LOC_Os01g72690
Os.7395.1.S1_s_at--744--6591Chr01:42510142..42510166 (25 bp)
GATTGATCCCAGCTCCTGGATACAG
LOC_Os01g72690
Os.7395.1.S1_s_at--592--7951Chr01:42510159..42510183 (25 bp)
GGATACAGTCCAGTGTCAGAGTTGA
LOC_Os01g72690
Os.7395.1.S1_s_at--299--6651Chr01:42510179..42510203 (25 bp)
GTTGAGAGTTTCAGCTGGCCATCAG
LOC_Os01g72690
Os.7395.1.S1_s_at--844--9651Chr01:42510200..42510224 (25 bp)
TCAGAAGAGTTTCCCACGAGTCCAG
LOC_Os01g72690
Os.7395.1.S1_s_at--531--6091Chr01:42510217..42510241 (25 bp)
GAGTCCAGCTAACACCGAGCGGATA
LOC_Os01g72690
Os.7395.1.S1_s_at--902--6072Chr01:42510255..42510279 (25 bp)
GAGTTTGTTGCTTGTTACCATTCCA
LOC_Os01g72690
Os.7395.1.S1_s_at--418--3711Chr01:42510308..42510332 (25 bp)
CTAGAAGGCTGCTGCGTGTAGATTT
LOC_Os01g72690
Target Sequence 
AAGATCGGAAGCTGCTGTCACCCGGGGATGCTCTCATCTGCAGCATTTCTCCATGGCCTGTGCCCACGGCTTGCCTGGTG
GATTCAACAACCGATTTCCTACGCAGCATCCACGAGGGTCTCCACTGGAACCTGAGGAAGTCCCAGTCATTCGACGGCCC
GCGTGATTGATCCCAGCTCCTGGATACAGTCCAGTGTCAGAGTTGAGAGTTTCAGCTGGCCATCAGAAGAGTTTCCCACG
AGTCCAGCTAACACCGAGCGGATAAATGTACCTAGCAGAGTTTGTTGCTTGTTACCATTCCATATACATATACATATACA
TATACATATACTAGAAGGCTGCTGCGTGTAGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7395.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis