Browse Element(s) Details


Os.7429.1.S1_at

Description gb:AK069809.1
DB_XREF= gi:32979833
TID=Os.7429.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7429 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030J03, full insert sequence.
FL= gb:AK069809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2761011/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27580OsAffx.13079.1.S1_at11/113+15790978..15791835hypothetical protein
LOC_Os03g27590Os.50043.1.A1_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.50043.1.A1_x_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_x_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.2.S1_at3/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27610Os.7429.1.S1_at11/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27610OsAffx.32056.4.S1_x_at1/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27610OsAffx.32056.3.S1_x_at1/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27630OsAffx.3347.1.S1_at10/113+15820661..15821849hypothetical protein
LOC_Os03g27640NANA3+15824387..15826313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g27650NANA3+15826801..15827559retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g27670Os.26886.2.S1_s_at10/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27670Os.26886.6.S1_s_at9/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27670OsAffx.16467.1.S1_at9/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27670Os.26886.3.S1_x_at5/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7429.1.S1_at--611--7971Chr03:15816615..15816639 (25 bp)
GGATCGTCCGGTGGCTGCGCAACAA
LOC_Os03g27610
Os.7429.1.S1_at--394--4671Chr03:15817017..15817041 (25 bp)
GCGTGGCGTGCAAGCGTTAGTAACT
LOC_Os03g27610
Os.7429.1.S1_at--918--10051Chr03:15817034..15817058 (25 bp)
TAGTAACTGTACACGCATCATGCTG
LOC_Os03g27610
Os.7429.1.S1_at--410--8751Chr03:15817041..15817065 (25 bp)
TGTACACGCATCATGCTGACGCGAT
LOC_Os03g27610
Os.7429.1.S1_at--578--4971Chr03:15817048..15817072 (25 bp)
GCATCATGCTGACGCGATCTTTTTT
LOC_Os03g27610
Os.7429.1.S1_at--759--611Chr03:15817053..15817077 (25 bp)
ATGCTGACGCGATCTTTTTTATTTT
LOC_Os03g27610
Os.7429.1.S1_at--1066--10351Chr03:15817088..15817112 (25 bp)
TTTTTACCTTTCTAGCGGACATGGG
LOC_Os03g27610
Os.7429.1.S1_at--74--9771Chr03:15817116..15817140 (25 bp)
TAACAAGACGTGACAGTAGTGCAAT
LOC_Os03g27610
Os.7429.1.S1_at--614--5651Chr03:15817127..15817151 (25 bp)
GACAGTAGTGCAATCGGTTTGTAAC
LOC_Os03g27610
Os.7429.1.S1_at--391--3191Chr03:15817137..15817161 (25 bp)
CAATCGGTTTGTAACGTGCGTATAC
LOC_Os03g27610
Os.7429.1.S1_at--1124--7291Chr03:15817152..15817176 (25 bp)
GTGCGTATACCAACATTGATCCATT
LOC_Os03g27610
Target Sequence 
GGATCGTCCGGTGGCTGCGCAACAAGGGGNTGNCNCCCATCATCGACATCTTCATGGCGGCCAGCTCCGACCTCGTCGAC
ATCCNACGCCNCCNTCATNTTCCNAGTCGCTNCACAGCGACGGCGACTACCTCCGCATCCAGGACAACACGCTNCCACGG
CGACGCCGCCACGGTGGACGCCGCCACCAGGGACAACATGCGGGCGCTCGTCGGGATCGGCGANGCGGANNNTGGCGCAG
CGGGTNTCGAGGGTCNAACGTCGAGACCGGCNAGGTACGTCNGAGGTGCCCGGCGCCNGGCAGCAACGCCGACGCGCTGA
NGGGCTTCGCCAGGCAGCTCTCCGAGGAGAGGAGGGCGAGGCTAGGTCGGCGAAANNCCTGCGGCGGCGGCGGCGAAGGA
GAGCCCAGCGGCGTGGCGTGCAAGCGTTAGTAACTGTACACGCATCATGCTGACGCGATCTTTTTTATTTTTCTTTTTTT
TTTTTTACCTTTCTAGCGGACATGGGGAATAACAAGACGTGACAGTAGTGCAATCGGTTTGTAACGTGCGTATACCAACA
TTGATCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis