Browse Element(s) Details


Os.7444.1.S1_x_at

Description gb:AU101100
DB_XREF= gi:9865350
DB_XREF=AU101100
CLONE=E0834
TID=Os.7444.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) aminoacyl peptidase-like (OJ1165_F02.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4897011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48930OsAffx.28960.1.S1_at11/117+29276651..29277271hypothetical protein
LOC_Os07g48940OsAffx.22589.1.S1_at11/117+29278401..29280315F-box domain containing protein
LOC_Os07g48950Os.16886.2.S1_at9/117+29287535..29289922betaine-aldehyde dehydrogenase, putative
LOC_Os07g48950Os.35212.1.S1_x_at1/117+29287535..29289922betaine-aldehyde dehydrogenase, putative
LOC_Os07g48960Os.35212.1.S1_x_at11/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48960Os.47596.1.S1_at10/117+29290616..29301149Lon protease homolog 2, mitochondrial precursor, putative, expressed
LOC_Os07g48970Os.7444.1.S1_x_at11/117+29302048..29306895expressed protein
LOC_Os07g48980Os.1479.1.S1_at11/117+29321412..29322933Nicotianamine synthase 3, putative, expressed
LOC_Os07g48989NANA7+29327175..29327558NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7444.1.S1_x_at--851--251Chr07:29305372..29305396 (25 bp)
ATATCCGCAACTGGCATTGCTGCAG
LOC_Os07g48970
Os.7444.1.S1_x_at--859--8111Chr07:29305423..29305447 (25 bp)
GGACGGTGTTAAACTCACTGCTACA
LOC_Os07g48970
Os.7444.1.S1_x_at--822--1971Chr07:29305439..29305463 (25 bp)
ACTGCTACATTATATCTGCCTCCAG
LOC_Os07g48970
Os.7444.1.S1_x_at--719--2431Chr07:29305477..29305501 (25 bp)
AAAAGATGAGCCTCTTCCATGCCTA
LOC_Os07g48970
Os.7444.1.S1_x_at--916--591Chr07:29305495..29305519 (25 bp)
ATGCCTAATTTGGTCGTATCCTGGA
LOC_Os07g48970
Os.7444.1.S1_x_at--252--2051Chr07:29305590..29305614 (25 bp)
ACTTTCCTCTTCTTTGGTTAGCTAG
LOC_Os07g48970
Os.7444.1.S1_x_at--81--10011Chr07:29305612..29305731 (25 bp)
TAGAGGGTTTGCTATTCTGGCCGAC
LOC_Os07g48970
Os.7444.1.S1_x_at--950--6531Chr07:29305804..29305828 (25 bp)
GATTATGCCACCCTGTACTTTGAAC
LOC_Os07g48970
Os.7444.1.S1_x_at--966--5471Chr07:29305825..29305849 (25 bp)
GAACTTCTGGCCTTGCTAGTATGCA
LOC_Os07g48970
Os.7444.1.S1_x_at--889--1172Chr07:29305851..29305875 (25 bp)
AGTACACAATTTTCATGCTCTCCAA
LOC_Os07g48970
Os.7444.1.S1_x_at--283--4271Chr07:29305883..29305907 (25 bp)
CCTGTACTCTCCCTATTGAAACATA
LOC_Os07g48970
Target Sequence 
ATATCCGCAACTGGCATTGCTGCAGAAAGAAGTAATCAGATACCAGCGAGTGGACGGTGTTAAACTCACTGCTACATTAT
ATCTGCCTCCAGGCTATGATCCATCAAAAGATGAGCCTCTTCCATGCCTAATTTGGTCGTATCCTGGAGAATTTAAAAGC
AGAGAGGCTGCTGGCCAAGTCCGTCGCTCACCCAATAAATTTGCACGCATCAGGAGCAACTTTCCTCTTCTTTGGTTAGC
TAGAGGGTTTGCTATTCTGGCCGACCCAACAATCCCTATAATTGGTGAAAGAGACCAAGAGGCTAATGATAGGTAGTTAT
ACTATTCATCTAAACATGATTATGCCACCCTGTACTTTGAACTTCTGGCCTTGCTAGTATGCAAAGTACACAATTTTCAT
GCTCTCCAATGTCCGTCCTGTACTCTCCCTATTGAAACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7444.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis