Browse Element(s) Details


Os.7458.1.S1_a_at

Description gb:AK070077.1
DB_XREF= gi:32980101
TID=Os.7458.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045B01, full insert sequence.
FL= gb:AK070077.1 gb:AK061227.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0591011/11Nitrate/chlorate transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05870OsAffx.17522.1.S1_at11/118+3154294..3158875Oxysterol-binding protein, expressed
LOC_Os08g05880Os.11715.2.S1_x_at11/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880OsAffx.30567.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880Os.10162.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05890Os.18138.1.S1_at10/118+3165261..3169089MSP domain containing protein, expressed
LOC_Os08g05900OsAffx.29056.1.S1_at11/118+3169173..3169640hypothetical protein
LOC_Os08g05910Os.7458.1.S1_a_at11/118+3175990..3184094Nitrate/chlorate transporter, putative, expressed
LOC_Os08g05920Os.45902.1.A1_x_at4/118+3186045..3190276retrotransposon protein, putative, unclassified
LOC_Os08g05920Os.56372.1.S1_at1/118+3186045..3190276retrotransposon protein, putative, unclassified
LOC_Os08g05920OsAffx.10222.1.S1_x_at1/118+3186045..3190276retrotransposon protein, putative, unclassified
LOC_Os08g05930Os.10703.2.S1_x_at1/118+3193079..3198727retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015706biological_processnitrate transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015112molecular_functionnitrate transporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7458.1.S1_a_at--849--9691Chr08:3176554..3176578 (25 bp)
TCAACAAGGGCCAGCTCCACAAGTT
LOC_Os08g05910
Os.7458.1.S1_a_at--795--4151Chr08:3176478..3176502 (25 bp)
CGCCGCCAGGTGGTACAAGTACAAG
LOC_Os08g05910
Os.7458.1.S1_a_at--593--191Chr08:3176346..3176370 (25 bp)
ATTTCTTCTTCGCATCTTGTACTAT
LOC_Os08g05910
Os.7458.1.S1_a_at--727--3991Chr08:3176285..3176309 (25 bp)
CGTGTGTACCAAGCGAGGCGTGTAT
LOC_Os08g05910
Os.7458.1.S1_a_at--865--4611Chr08:3176273..3176297 (25 bp)
GCGAGGCGTGTATGCGTATACGTAT
LOC_Os08g05910
Os.7458.1.S1_a_at--952--6991Chr08:3176244..3176268 (25 bp)
GTACGTGTGCCTGCGTGTAGTATAA
LOC_Os08g05910
Os.7458.1.S1_a_at--844--7111Chr08:3176114..3176138 (25 bp)
GTCAGTGACTCGAGGTTGGTGCATT
LOC_Os08g05910
Os.7458.1.S1_a_at--432--10391Chr08:3176091..3176115 (25 bp)
TTTTGTGTCGTGTGGGAGAGTCTTC
LOC_Os08g05910
Os.7458.1.S1_a_at--467--6011Chr08:3176076..3176100 (25 bp)
GAGAGTCTTCGTGGTGTGGTAAAAA
LOC_Os08g05910
Os.7458.1.S1_a_at--766--2771Chr08:3176049..3176073 (25 bp)
AAGAGAACACCACGGCTTCATCAGT
LOC_Os08g05910
Os.7458.1.S1_a_at--458--411Chr08:3176030..3176054 (25 bp)
ATCAGTGTACAATCATCCGATCGAA
LOC_Os08g05910
Target Sequence 
TCAACAAGGGCCAGCTCCACAAGTTCTACTGGCTCCTCGCCGGCGTCTGCCTCGCCAACCTCCTCGTATACCTCGTCGCC
GCCAGGTGGTACAAGTACAAGGCCGGCCGCGCCGCCGCCGCCGGCGACGGCGGCGTCGAGATGGCCGACGCCNAGCCATG
CCTCCACTGATCCACACCGTCCATCCATCCATCCATCAGACGGCTACGATTTCTTCTTCGCATCTTGTACTATATATATA
CTAGTATACTACTAGTACGTACGTACGTACGTGTGTACCAAGCGAGGCGTGTATGCGTATACGTATACGTGTACGTGTGC
CTGCGTGTAGTATAATGGAATTAATAACTTGTTAGAGGGGGGAAACAGTAAAAAAAATGACGAAATTAATGGTGGGGATT
AGGGAGAGATTTTTAAGGGTGGTGGTGGTGGGGTCGGGGTGTCAGTGACTCGAGGTTGGTGCATTTTGTGTCGTGTGGGA
GAGTCTTCGTGGTGTGGTAAAAAAAAAGAGAACACCACGGCTTCATCAGTGTACAATCATCCGATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7458.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis