Browse Element(s) Details


Os.7466.1.S1_at

Description gb:AK063836.1
DB_XREF= gi:32973854
TID=Os.7466.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7466 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0510C12.16 (P0510C12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B08, full insert sequence.
FL= gb:AK073560.1 gb:AK063836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4553011/11Single-strand binding protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45510OsAffx.23670.1.S1_x_at11/111+26152573..26153484uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os01g45510OsAffx.27391.1.S1_x_at2/111+26152573..26153484uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os01g45520OsAffx.23671.2.S1_x_at11/111+26162999..26166831D-mannose binding lectin family protein
LOC_Os01g45520OsAffx.21804.2.S1_x_at1/111+26162999..26166831D-mannose binding lectin family protein
LOC_Os01g45530Os.7466.1.S1_at11/111+26168403..26170345Single-strand binding protein family protein, expressed
LOC_Os01g45540NANA1+26185984..26186496hypothetical protein
LOC_Os01g45550Os.33170.1.S1_x_at11/111+26190565..26195111auxin efflux carrier protein, putative, expressed
LOC_Os01g45550Os.33170.2.S1_at10/111+26190565..26195111auxin efflux carrier protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003697molecular_functionsingle-stranded DNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7466.1.S1_at--1020--1171Chr01:26169777..26169801 (25 bp)
AGTACGCTGAACGATGCTCCGTGCA
LOC_Os01g45530
Os.7466.1.S1_at--1080--5811Chr01:26169174..26169193 (20 bp)
GACCGGTTCTGTTCTTTATCTGGAA
LOC_Os01g45530
Os.7466.1.S1_at--376--2871Chr01:26169133..26169157 (25 bp)
AAGTGTTTTCTGATCCTATAACTGG
LOC_Os01g45530
Os.7466.1.S1_at--450--351Chr01:26169116..26169140 (25 bp)
ATAACTGGACTGGTTCGGCGCATAA
LOC_Os01g45530
Os.7466.1.S1_at--975--3092Chr01:36289998..36290018 (21 bp)
AATAGCTGTGCGCTCAAATGGCCGT
NONE
Os.7466.1.S1_at--654--2951Chr01:26168781..26168802 (22 bp)
AATGGCCGTCTCTTGTTTCTTGGGA
LOC_Os01g45530
Os.7466.1.S1_at--176--611Chr01:26168747..26168771 (25 bp)
ATGCGCCCAAGTTAGGTGAAGCCAA
LOC_Os01g45530
Os.7466.1.S1_at--339--8891Chr01:26168700..26168724 (25 bp)
TGAGGTCCACTCGACATCAAGGTAT
LOC_Os01g45530
Os.7466.1.S1_at--1008--6151Chr01:26168648..26168672 (25 bp)
GAGGTATCTCAACTGTGCTTAGCTT
LOC_Os01g45530
Os.7466.1.S1_at--659--5671Chr01:26168560..26168584 (25 bp)
GACATCATTGTCGAAACCCTCTAAT
LOC_Os01g45530
Os.7466.1.S1_at--1145--2451Chr01:26168494..26168518 (25 bp)
AACAACATATGTGGCTGTGCTATTT
LOC_Os01g45530
Target Sequence 
AGTACGCTGAACGATGCTCCGTGCAGTGGCACCGCGTCTGCATCTACCCGGAACGGCTCGGCAGCCTCGCGCTCAAGCAC
GTCAAGACCGGTTCTGTTCTTTATCTGGAAGGGAATCTTGAGACGAAAGTGTTTTCTGATCCTATAACTGGACTGGTTCG
GCGCATAAGAGAAATAGCTGTGCGCTCAAATGGCCGTCTCTTGTTTCTTGGGAATGATTGTAATGCGCCCAAGTTAGGTG
AAGCCAAGGGCGTTGGCTACTTCNTGAAACTGAGGTCCACTCGACATCAAGGTATATCAGTTGATAAAATTGATTTAAAT
TAGAGGTATCTCAACTGTGCTTAGCTTTAAGCGTTCAACGTATGGTGAAGATCTCAGTAGTGGACCAGCTTTATGGAACA
AATACAGTTGGACATCATTGTCGAAACCCTCTAATAATTGAACAACTGATTGTACTGTATAACTTGATTTTGACAAAACA
ACATATGTGGCTGTGCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis