Browse Element(s) Details


Os.7499.1.S1_at

Description gb:AK106062.1
DB_XREF= gi:32991271
TID=Os.7499.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7499 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU101213(E2609),C72987(E2609)~disease resistance response protein-like (P0585H11.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G06, full insert sequence.
FL= gb:AK106062.1 gb:AK119790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0166011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01620Os.16630.1.S1_at11/117+381818..382537Dirigent-like protein, expressed
LOC_Os07g01630Os.27990.1.S1_at10/117+382650..383470Dirigent-like protein, expressed
LOC_Os07g01640NANA7+386259..389308retrotransposon protein, putative, unclassified
LOC_Os07g01650NANA7+389938..395275transposon protein, putative, unclassified
LOC_Os07g01660Os.7499.1.S1_at11/117+402852..403921Dirigent-like protein, expressed
LOC_Os07g01670OsAffx.16032.1.S1_at11/117+405686..405889hypothetical protein
LOC_Os07g01680OsAffx.16033.1.S1_at11/117+411226..411888Dirigent-like protein
LOC_Os07g01690NANA7+413199..413553hypothetical protein
LOC_Os07g01700OsAffx.28224.1.S1_at11/117+417244..417748hypothetical protein
LOC_Os07g01710Os.11806.1.S1_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01710Os.11806.2.S1_x_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01720Os.19340.1.S1_at11/117+427110..429906expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7499.1.S1_at--989--5971Chr07:403400..403424 (25 bp)
GAGAACAACGGCAGCACCATCGCGG
LOC_Os07g01660
Os.7499.1.S1_at--808--1731Chr07:403385..403409 (25 bp)
ACCATCGCGGTGATCGGCCACGACG
LOC_Os07g01660
Os.7499.1.S1_at--1041--5091Chr07:403321..403345 (25 bp)
GCACGGGCAAGTTCAGGATGGCCAC
LOC_Os07g01660
Os.7499.1.S1_at--1159--5151Chr07:403315..403339 (25 bp)
GCAAGTTCAGGATGGCCACCGGCTA
LOC_Os07g01660
Os.7499.1.S1_at--695--7211Chr07:403049..403073 (25 bp)
GTCGAGTCGTCGGTGTCCAAGAGAT
LOC_Os07g01660
Os.7499.1.S1_at--261--7211Chr07:403044..403068 (25 bp)
GTCGTCGGTGTCCAAGAGATTCGTT
LOC_Os07g01660
Os.7499.1.S1_at--761--4371Chr07:403033..403057 (25 bp)
CCAAGAGATTCGTTGGTGCCTTCTC
LOC_Os07g01660
Os.7499.1.S1_at--1053--91Chr07:403026..403050 (25 bp)
ATTCGTTGGTGCCTTCTCTTTGTTT
LOC_Os07g01660
Os.7499.1.S1_at--881--8731Chr07:402914..402938 (25 bp)
TGTCACTCCACCTTGACCGTGAAGG
LOC_Os07g01660
Os.7499.1.S1_at--232--4211Chr07:402907..402931 (25 bp)
CCACCTTGACCGTGAAGGTATTACT
LOC_Os07g01660
Os.7499.1.S1_at--263--1971Chr07:402885..402909 (25 bp)
ACTGTACTGCAGCATAAAGGTCCCC
LOC_Os07g01660
Target Sequence 
GAGAACAACGGCAGCACCATCGCGGTGATCGGCCACGACGACACCACGGCCACGGTGAGGGAGCTGTCCGTGGTGGGCGG
CACGGGCAAGTTCAGGATGGCCACCGGCTACGTGGTGTGGAAGACGGCCAGCATGAGCGCCAGCACCGGCGTGTTCGAGC
TCGACGTCTACGTCACCACGCCCAACGCCACAACCATCGACGCCTCCGCGCCGGTGTCGCCGTTGGACGGCGGAGGCAGC
AGCGGGTCGACGTCGACGGCGAAGTCGGGCGCGGCGGGGCGACAGGTGGGGTGGGTGAGTGCGTGCGTAGTGGGGTTGGT
GGTGGCGTTGGTTGGGCGTGGTTGGTGAGGCGTCGAGTCGTCGGTGTCCAAGAGATTCGTTGGTGCCTTCTCTTTGTTTT
NCGAGTNTTNNANTTTGTTGGNAATCGGNATTCCCGTACTGAANCCTGNTTTTACTGCAANGTTAATTGTTTGGTTGGTT
GGTTGCCTTCCTGTCACTCCACCTTGACCGTGAAGGTATTACTGTACTGCAGCATAAAGGTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis