Browse Element(s) Details


Os.7515.1.S1_s_at

Description gb:AK070601.1
DB_XREF= gi:32980625
TID=Os.7515.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7515 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023057B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023057B08, full insert sequence.
FL= gb:AK070601.1 gb:AK059499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0135011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01280Os.20421.1.S1_at11/112+158674..163732RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os02g01290Os.23805.2.A1_at11/112+163662..164372expressed protein
LOC_Os02g01300OsAffx.11858.1.S1_at11/112+165491..167012Plant invertase/pectin methylesterase inhibitor family protein, expressed
LOC_Os02g01310Os.5658.1.S1_at11/112+168442..169528pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g01320OsAffx.11859.1.S1_at11/112+171034..171569hypothetical protein
LOC_Os02g01326Os.23534.1.A1_at11/112+175818..179370Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g01332Os.4982.1.S1_at11/112+180321..18344060S ribosomal protein L9, putative, expressed
LOC_Os02g01340Os.15243.2.S1_x_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01340Os.15243.1.S1_a_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01350Os.7515.1.S1_s_at11/112+187508..192121expressed protein
LOC_Os02g01360Os.10177.1.S1_at11/112+205428..207507expressed protein
LOC_Os02g01370OsAffx.24048.1.S1_at9/112+207750..209337hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7515.1.S1_s_at--866--9731Chr02:188085..188109 (25 bp)
TCAATCGGAAACCAAGACAGCCTTG
LOC_Os02g01350
Os.7515.1.S1_s_at--122--5651Chr02:188070..188094 (25 bp)
GACAGCCTTGTGAATGCTCGTAAGC
LOC_Os02g01350
Os.7515.1.S1_s_at--673--8171Chr02:187997..188021 (25 bp)
GGAACTACTACAACATGGAGCTGAA
LOC_Os02g01350
Os.7515.1.S1_s_at--340--2291Chr02:187843..187867 (25 bp)
AAATGCTATATACTGGCGCGCTCGT
LOC_Os02g01350
Os.7515.1.S1_s_at--1048--9771Chr02:187819..187843 (25 bp)
TAAGGTGCTCGGTGATTCCAGTGCC
LOC_Os02g01350
Os.7515.1.S1_s_at--234--8531Chr02:187793..187817 (25 bp)
TGGACATTCCCCACAGCTAGCAATG
LOC_Os02g01350
Os.7515.1.S1_s_at--197--3211Chr02:187773..187797 (25 bp)
CAATGTGTGACTTGTGTATCATGCA
LOC_Os02g01350
Os.7515.1.S1_s_at--985--10111Chr02:187706..187730 (25 bp)
TATCAAGTCAAGTAGCGCGGTGGAA
LOC_Os02g01350
Os.7515.1.S1_s_at--334--4991Chr02:187618..187642 (25 bp)
GCATGCTCTGTATGATTGCCGATTA
LOC_Os02g01350
Os.7515.1.S1_s_at--388--2711Chr02:187592..187616 (25 bp)
AAGCTTGTACAGATACGGCGATAGT
LOC_Os02g01350
Os.7515.1.S1_s_at--378--6351Chr02:187563..187587 (25 bp)
GATCCCCGAAACATACTACTAGCTA
LOC_Os02g01350
Target Sequence 
TCAATCGGAAACCAAGACAGCCTTGTGAATGCTCGTAAGCTGTATGATGCAGCGCTCGATCTCTATCCCCAGGAAAGAGA
ACTTTGGAGGAACTACTACAACATGGAGCTGAAGTTGGGAACATCAGAAACAGCAAATGCTATATACTGGCGCGCTCGTA
AGGTGCTCGGTGATTCCAGTGCCCTGGACATTCCCCACAGCTAGCAATGTGTGACTTGTGTATCATGCAATATCATTTTT
GATCTGATTTGATTACTTTGTTGTTTAAGCGTATCAAGTCAAGTAGCGCGGTGGAAGAAAATTTTGGCTAGTCTATCTGT
TGGATTTGTGTTATGAGCCCCTAACTAGGGTTAAAATTTGCATGCTCTGTATGATTGCCGATTAAAAGCTTGTACAGATA
CGGCGATAGTGGCCGATCCCCGAAACATACTACTAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7515.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis