Browse Element(s) Details


Os.7517.1.S1_at

Description gb:AK103374.1
DB_XREF= gi:32988583
TID=Os.7517.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127B09, full insert sequence.
FL= gb:AK103374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2828010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28250OsAffx.28642.1.S1_at11/117+16501471..16503020lipase class 3 family protein, putative
LOC_Os07g28260Os.46016.1.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.4.S1_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.3.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.2.A1_a_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.25500.1.S1_at10/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28280Os.7517.1.S1_at10/117+16520760..16522328expressed protein
LOC_Os07g28280OsAffx.22334.1.S1_at4/117+16520760..16522328expressed protein
LOC_Os07g28290OsAffx.22333.1.S1_at6/117+16524705..16526475hypothetical protein
LOC_Os07g28300OsAffx.28643.1.S1_at11/117+16527012..16529952Leucine Rich Repeat family protein
LOC_Os07g28310NANA7+16530903..16532984retrotransposon protein, putative, unclassified
LOC_Os07g28320OsAffx.16451.1.S1_x_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28320OsAffx.16451.1.S1_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28330NANA7+16533868..16534731hypothetical protein
LOC_Os07g28340NANA7+16543049..16544307retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.7517.1.S1_at--794--6371Chr07:16521311..16521335 (25 bp)
GATCCGGTGATTTTACTTGAATAAG
LOC_Os07g28280
Os.7517.1.S1_at--979--7271Chr07:16521260..16521284 (25 bp)
GTGCTTATGAATGCTTTGGGTGGTA
LOC_Os07g28280
Os.7517.1.S1_at--265--5331Chr07:16521206..16521230 (25 bp)
GAAGTGGATGCTTTGTTAGCGCAAT
LOC_Os07g28280
Os.7517.1.S1_at--336--7671NONE
GGGATATCACTAAACTTTTGCAATG
NONE
Os.7517.1.S1_at--1118--91Chr07:16521126..16521150 (25 bp)
ATTCTCTTTCTTTAATTTGTGGACA
LOC_Os07g28280
Os.7517.1.S1_at--1096--1131Chr07:16521095..16521119 (25 bp)
AGTCCATTAGTCTTGATGAGGTGCT
LOC_Os07g28280
Os.7517.1.S1_at--80--711Chr07:16521080..16521104 (25 bp)
ATGAGGTGCTTCTTTTCGTGCTTGC
LOC_Os07g28280
Os.7517.1.S1_at--889--9411Chr07:16521065..16521089 (25 bp)
TCGTGCTTGCAGAAGGCCTGGTGTT
LOC_Os07g28280
Os.7517.1.S1_at--1134--131Chr07:16520928..16520952 (25 bp)
ATTAGGACTACCGAAATCACCACTG
LOC_Os07g28280
Os.7517.1.S1_at--446--391Chr07:16520913..16520937 (25 bp)
ATCACCACTGATATCATGTTGCTAA
LOC_Os07g28280
Os.7517.1.S1_at--953--631Chr07:16520888..16520912 (25 bp)
ATGCATCTTGTACCATCAGAAACAG
LOC_Os07g28280
Target Sequence
GATCCGGTGATTTTACTTGAATAAGGAAACCTTCTAATGACAGTTTAGTATGTGCTTATGAATGCTTTGGGTGGTATACA
GGTTATTTGCTGTTTTCTTTGCAGAGAAGTGGATGCTTTGTTAGCGCAATAAGCTGGGGGATATCACTAAACTTTTGCAA
TGTCAAACTTGAAGGAAATTTAGAAATTCTCTTTCTTTAATTTGTGGACAAAGTTAAGTCCATTAGTCTTGATGAGGTGC
TTCTTTTCGTGCTTGCAGAAGGCCTGGTGTTCTCGTACTTATAAATGATTGTGACTGGGAGCTATGCGGTGGCCTTGACG
CGGAGTTGGAGGAGAAGGATGTTGTTGTTTTTATCTCCACATTACACGGTGGTTAGTACAACTATTAGGACTACCGAAAT
CACCACTGATATCATGTTGCTAAATGCATCTTGTACCATCAGAAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis