Browse Element(s) Details


Os.7524.1.S1_at

Description gb:AK072916.1
DB_XREF= gi:32982939
TID=Os.7524.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149A14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149A14, full insert sequence.
FL= gb:AK072916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1400011/11Acyl CoA binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13950Os.12975.1.S1_at11/113+7544375..7546827Actin-depolymerizing factor, putative, expressed
LOC_Os03g13960Os.10924.1.S1_at10/113+7552393..7556481expressed protein
LOC_Os03g13970OsAffx.12848.1.S1_x_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13970Os.4677.1.S1_a_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13984OsAffx.3235.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g13984OsAffx.12849.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g14000Os.7524.1.S1_at11/113+7570923..7576500Acyl CoA binding protein, expressed
LOC_Os03g14010Os.8022.1.S1_at11/113+7578758..7582090Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g14020Os.20303.1.S1_s_at11/113+7582123..7586658expressed protein
LOC_Os03g14030OsAffx.12851.1.S1_at11/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14030Os.49709.1.S1_at10/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14040Os.32492.1.S1_at10/113+7594971..7597955expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0005783cellular_componentendoplasmic reticulum
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0000062molecular_functionacyl-CoA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7524.1.S1_at--1041--411Chr03:7574873..7574897 (25 bp)
ATCTTTTGTCAGAGGCTATTCCAGG
LOC_Os03g14000
Os.7524.1.S1_at--499--811Chr03:7574902..7575030 (25 bp)
ATGGGTGACAATATCTCGGGCACAA
LOC_Os03g14000
Os.7524.1.S1_at--580--6331Chr03:7575051..7575075 (25 bp)
GATGCTGTAGGGTCTGTCTTAACAA
LOC_Os03g14000
Os.7524.1.S1_at--196--5311Chr03:7575426..7575450 (25 bp)
GAAGGTCACTTGACAAGTTCCCCTA
LOC_Os03g14000
Os.7524.1.S1_at--50--2151Chr03:7576105..7576129 (25 bp)
ACAGAGTTCTGACATCCCTGCTGAA
LOC_Os03g14000
Os.7524.1.S1_at--71--10731Chr03:7576156..7576180 (25 bp)
TTGCATCAGTGATTTCAGCCCATTG
LOC_Os03g14000
Os.7524.1.S1_at--419--10711Chr03:7576178..7576202 (25 bp)
TTGCTGAGACCGCTACCGATGCCTT
LOC_Os03g14000
Os.7524.1.S1_at--312--4051Chr03:7576194..7576218 (25 bp)
CGATGCCTTCCTCATAAGATTAGAT
LOC_Os03g14000
Os.7524.1.S1_at--130--1131Chr03:7576225..7576249 (25 bp)
AGTGCTCCTGTGGTGCTAATATTAG
LOC_Os03g14000
Os.7524.1.S1_at--394--9811Chr03:7576297..7576321 (25 bp)
TAACTGCCGGTCCTACTGCGTGTAT
LOC_Os03g14000
Os.7524.1.S1_at--833--5691Chr03:7576335..7576359 (25 bp)
GACTTATCATCTGGTATTCTGGTGT
LOC_Os03g14000
Target Sequence 
ATCTTTTGTCAGAGGCTATTCCAGGATGGATGGGTGACAATATCTCGGGCACAAAGGAACATGAAGCTGGTGATGATGCT
GTAGGGTCTGTCTTAACAATGACTTCAAATACAATCAACCAACATGACAGTCAAGGGAATGAAGACAATACTGGCATGTA
TGAAGGTCACTTGACAAGTTCCCCTAACCCAGAGAAAGGACAGAGTTCTGACATCCCTGCTGAATGAACATAACACTCAT
GGAAGATTTCTTGCATCAGTGATTTCAGCCCATTGCTGAGACCGCTACCGATGCCTTCCTCATAAGATTAGATTTGTACA
GTGCTCCTGTGGTGCTAATATTAGTGTTGTCATGGTGTTGGTTTGTGTATATATATGACTGTATATATCAGTAACTGCCG
GTCCTACTGCGTGTATTCCGCCAGCAGCAGACTTATCATCTGGTATTCTGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis