Browse Element(s) Details


Os.7530.1.S1_at

Description gb:AK063132.1
DB_XREF= gi:32973150
TID=Os.7530.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-F08, full insert sequence.
FL= gb:AK063132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2971011/11Expansin-related protein 2 precursor, putative, expressed
LOC_Os09g296901/11Expansin-related protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29670Os.39617.1.S1_at2/119+18043670..18049945ABC-2 type transporter family protein
LOC_Os09g29680OsAffx.17964.2.S1_x_at11/119+18053594..18054286hypothetical protein
LOC_Os09g29680OsAffx.17964.2.S1_at11/119+18053594..18054286hypothetical protein
LOC_Os09g29690Os.7530.1.S1_at1/119+18057252..18057979Expansin-related protein 2 precursor, putative, expressed
LOC_Os09g29700NANA9+18058643..18063517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g29710Os.7530.1.S1_at11/119+18066435..18067412Expansin-related protein 2 precursor, putative, expressed
LOC_Os09g29720OsAffx.10637.3.S1_s_at11/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29720OsAffx.10637.1.S1_s_at10/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29720OsAffx.10637.4.S1_s_at8/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29730OsAffx.32056.1.S1_x_at9/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29730OsAffx.32056.1.S1_at2/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29740OsAffx.30084.1.S1_at10/119+18083521..18083901Expansin-related protein 2 precursor, putative
LOC_Os09g29750Os.10846.1.S1_at11/119+18084525..18089758expressed protein
LOC_Os09g29760OsAffx.17965.1.S1_at11/119+18090034..18091413membrane associated salt-inducible protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7530.1.S1_at--3--9351Chr09:18066593..18066617 (25 bp)
TCGCTGGTCGCTGCGGACTCTGGCA
LOC_Os09g29710
Os.7530.1.S1_at--864--8111Chr09:18066607..18066631 (25 bp)
GGACTCTGGCACTGCGACCTTCTAC
LOC_Os09g29710
Os.7530.1.S1_at--735--3931Chr09:18066823..18066847 (25 bp)
CGGCGTGCGGGCAGCAGTACGTGGT
LOC_Os09g29710
Os.7530.1.S1_at--993--9912Chr09:18066840..18066864 (25 bp)
TACGTGGTGACGTGCACGGGCCCGA
LOC_Os09g29710
Os.7530.1.S1_at--407--7311Chr09:18067221..18067245 (25 bp)
GTGCATCTCCAAATTAAAATAAGGG
LOC_Os09g29710
Os.7530.1.S1_at--625--351Chr09:18067239..18067263 (25 bp)
ATAAGGGCAAGCTAGCTTGGATTGG
LOC_Os09g29710
Os.7530.1.S1_at--446--6611Chr09:18067258..18067282 (25 bp)
GATTGGAGCGAACTTGTGTGTTCCA
LOC_Os09g29710
Os.7530.1.S1_at--112--5891Chr09:18067263..18067287 (25 bp)
GAGCGAACTTGTGTGTTCCATAATT
LOC_Os09g29710
Os.7530.1.S1_at--511--10051Chr09:18067305..18067329 (25 bp)
TAGTACGTACCAAAAATAACAGATT
LOC_Os09g29710
Os.7530.1.S1_at--983--7351Chr09:18067344..18067368 (25 bp)
GTGAAAAAATGTCTCTCCTGATCTA
LOC_Os09g29710
Os.7530.1.S1_at--723--2411Chr09:18067348..18067372 (25 bp)
AAAAATGTCTCTCCTGATCTATAAA
LOC_Os09g29710
Target Sequence 
TCGCTGGTCGCTGCGGACTCTGGCACTGCGACCTTCTACACGCCCCCTTACACTCCGTCGGCGTGCTACGGGTTCGAGGA
CCAGGGGACGATGATCGCGNCGGCGAGCGACGTGTTCTGGAACGGCGGGGCGGCGTGCGGGCAGCAGTACGTGGTGACGT
GCACGGGCCCGACCAACCAGGGCGTGCCGCAGCCGTGCACCGGGCAGAGCGTCACCGTGAAGATCGTCGACCACTGCCCC
TCCGGCTGCGCGGGCACCATCGACCTCTCGCAGGAGGCCTTCGCCATCATCGCCAACCCCGACGCCGGCAAGGTCTTCAT
CGACTACCAACAGGTGTANTAATTCTACGGTTGAGGTGATGAAGACCGCACGNGTGTCACTATATATAATAAAGTGCATC
TCCAAATTAAAATAAGGGCAAGCTAGCTTGGATTGGAGCGAACTTGTGTGTTCCATAATTATGGTTAATTAATTAATTAG
TACGTACCAAAAATAACAGATTGTAACTGGGAGAGAGTGAAAAAATGTCTCTCCTGATCTATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis