Browse Element(s) Details


Os.7534.2.S1_a_at

Description gb:AK064868.1
DB_XREF= gi:32974886
TID=Os.7534.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000I21, full insert sequence.
FL= gb:AK064868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3944011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39400OsAffx.6084.1.S1_at11/118+24781793..24782206hypothetical protein
LOC_Os08g39410OsAffx.32166.1548.S1_s_at11/118+24784525..24790499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39420Os.26047.1.S1_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_s_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.1.S1_x_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_at4/118+24796731..24801938expressed protein
LOC_Os08g39430Os.47358.1.A1_at11/118+24802771..24803773expressed protein
LOC_Os08g39440Os.7534.2.S1_a_at11/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39440Os.2240.2.A1_at1/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39450Os.12139.1.S1_at2/118+24821094..24822077Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
LOC_Os08g39460Os.52825.1.S1_at11/118+24832923..24834505Protein kinase domain containing protein, expressed
LOC_Os08g39470OsAffx.17418.1.S1_at10/118+24838102..24840776hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7534.2.S1_a_at--674--3171Chr08:24813439..24813463 (25 bp)
AATTGGTGCCTAGCCCATCATACAG
LOC_Os08g39440
Os.7534.2.S1_a_at--965--4451Chr08:24813446..24813470 (25 bp)
GCCTAGCCCATCATACAGCATATTA
LOC_Os08g39440
Os.7534.2.S1_a_at--366--5231Chr08:24813595..24813619 (25 bp)
GAATTTGATAAACCACCATGCTGAT
LOC_Os08g39440
Os.7534.2.S1_a_at--67--8051Chr08:24813639..24813663 (25 bp)
GGAGATCAATGAACTGTCGTCACAT
LOC_Os08g39440
Os.7534.2.S1_a_at--168--5471Chr08:24813649..24813673 (25 bp)
GAACTGTCGTCACATTGAGCAAACA
LOC_Os08g39440
Os.7534.2.S1_a_at--546--5951Chr08:24813665..24813689 (25 bp)
GAGCAAACAGTTTTCTTCAGTCATC
LOC_Os08g39440
Os.7534.2.S1_a_at--404--4951Chr08:24813750..24813774 (25 bp)
GCATTTGAGGGCTAGTTTTTGGACA
LOC_Os08g39440
Os.7534.2.S1_a_at--693--4951Chr08:24813777..24813801 (25 bp)
GCATTTAGTCGGTAGTCTGGGCTCT
LOC_Os08g39440
Os.7534.2.S1_a_at--1014--8311Chr08:24813796..24813820 (25 bp)
GGCTCTTCATCATTGTAAGCTCCGA
LOC_Os08g39440
Os.7534.2.S1_a_at--342--10811Chr08:24813808..24813832 (25 bp)
TTGTAAGCTCCGACTGTACAGCAGT
LOC_Os08g39440
Os.7534.2.S1_a_at--1135--2131Chr08:24813825..24813849 (25 bp)
ACAGCAGTCTATCTATTTGTACTCT
LOC_Os08g39440
Target Sequence 
AATTGGTGCCTAGCCCATCATACAGCATATTAGAATCAGCATAATAAGCTTGGAAGATGGTTTATGGAAAAAAATGCTGC
TTTGTAAAAAAGGCTAAAAGCAGGAAAATACAAAAAAAGAGAANAAAATAAGAAAAGAGGAAGGAGTTTGGAGCCAGAAT
TTGATAAACCACCATGCTGATACTTGGAGGTGGTTGTATTGGAGATCAATGAACTGTCGTCACATTGAGCAAACAGTTTT
CTTCAGTCATCTGAAAGGACTTGCTGAGATTTGAAATAACTTCCATGGATGAGGATCAATTGTCAAATAGAGCATTTGAG
GGCTAGTTTTTGGACATGGCATTTAGTCGGTAGTCTGGGCTCTTCATCATTGTAAGCTCCGACTGTACAGCAGTCTATCT
ATTTGTACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7534.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis