Browse Element(s) Details


Os.7544.1.S1_at

Description gb:AK067445.1
DB_XREF= gi:32977463
TID=Os.7544.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013103N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013103N11, full insert sequence.
FL= gb:AK067445.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g284109/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28370OsAffx.19050.1.S1_at11/1111+15834004..15836835hypothetical protein
LOC_Os11g28380OsAffx.19051.1.S1_at11/1111+15838441..15838878hypothetical protein
LOC_Os11g28390OsAffx.21330.1.S1_at1/1111+15840149..15841075hypothetical protein
LOC_Os11g28400NANA11+15842208..15847228retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.7544.1.S1_at9/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.5217.1.S1_at1/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28420Os.52253.1.S1_at11/1111+15864770..15865563expressed protein
LOC_Os11g28420OsAffx.8000.1.S1_x_at1/1111+15864770..15865563expressed protein
LOC_Os11g28430OsAffx.31183.1.S1_at10/1111+15867195..15869881hypothetical protein
LOC_Os11g28430OsAffx.18697.2.A1_at7/1111+15867195..15869881hypothetical protein
LOC_Os11g28440OsAffx.19052.1.S1_at10/1111+15873308..15874748hypothetical protein
LOC_Os11g28450OsAffx.19053.1.S1_at11/1111+15876188..15876945hypothetical protein
LOC_Os11g28460OsAffx.8934.1.S1_x_at1/1111+15877993..15878668hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7544.1.S1_at--1143--6071Chr11:15857654..15857678 (25 bp)
GAGTATCTGACACAATTATCCTGAT
LOC_Os11g28410
Os.7544.1.S1_at--482--1151Chr11:15857738..15857762 (25 bp)
AGTCTGACTCTTTCATTTCACTATG
LOC_Os11g28410
Os.7544.1.S1_at--1038--9253Chr11:15857807..15857831 (25 bp)
TCCTCTTGCTTTCTCTGTGAACATA
LOC_Os11g28410
Os.7544.1.S1_at--1008--7611Chr11:15857880..15857904 (25 bp)
GGGAAATTCGTTCATTCACTGTAAG
LOC_Os11g28410
Os.7544.1.S1_at--516--4731Chr11:15857940..15857964 (25 bp)
GCTGTATCACGGATGCTGTAATGAA
LOC_Os11g28410
Os.7544.1.S1_at--529--8171Chr11:15857976..15858000 (25 bp)
GGAACATAGCATCAACCCTGAAATC
LOC_Os11g28410
Os.7544.1.S1_at--429--5811Chr11:15858064..15858088 (25 bp)
GACGCCAGGATTGCTGAGATGGATC
LOC_Os11g28410
Os.7544.1.S1_at--1055--6151Chr11:15858103..15858127 (25 bp)
GAGGATGGTTTCACCGAGTTGGTAT
LOC_Os11g28410
Os.7544.1.S1_at--479--2591Chr11:15858160..15858184 (25 bp)
AACGATGTGATTCTTCTTTGTGCCT
LOC_Os11g28410
Os.7544.1.S1_at--679--9551Chr11:15858174..15858198 (25 bp)
TCTTTGTGCCTGAATGTTCGTTTAT
NONE
Os.7544.1.S1_at--522--6631Chr11:15858211..15858235 (25 bp)
GTTGTCCTTTGTTATCAGCTTTTTA
NONE
Target Sequence 
GAGTATCTGACACAATTATCCTGATATCTGACAAACAAAAAACATTAGGTATGCAAAATCAAGTATCATAGGGATTGGGC
ATCAAGTCTGACTCTTTCATTTCACTATGAGTGTAATGGTATATATAGTCCTACCGTTTTACTCTTTTATTTTTCCTCTT
GCTTTCTCTGTGAACATAACAATATATCAAGTTAACTTATAACTACTTTACTTATCTTTTTTTCTAGGGAAATTCGTTCA
TTCACTGTAAGTATCAAGGGATAAAGATTGTGCATCCGCACAATGAGCTGTATCACGGATGCTGTAATGAAATGGTTCGA
TGGGAACATAGCATCAACCCTGAAATCTTTATCAATGCATACGATTGCTATGTCAATATGACGTGTTAGATTTATTTTGA
TCCCAAAATGGACGCCAGGATTGCTGAGATGGATCCAATGGATGATAATGAGGATGGTTTCACCGAGTTGGTATGGCAGG
ATATGTTGATAGACAACTTCTATGAAAACGATGTGATTCTTCTTTGTGCCTGAATGTTCGTTTATGTATTTATATTTGTT
GTCCTTTGTTATCAGCTTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis