Browse Element(s) Details


Os.7589.1.S1_at

Description gb:AK060024.1
DB_XREF= gi:32970042
TID=Os.7589.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7589 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-303-A09, full insert sequence.
FL= gb:AK060024.1 gb:AK070432.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4693011/1150S ribosomal protein L24, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46870OsAffx.15958.1.S1_at11/116+28447781..28448967Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46880OsAffx.15959.1.S1_s_at11/116+28451973..28455564Surp module family protein, expressed
LOC_Os06g46890Os.14747.1.S1_at11/116+28456955..28462486expressed protein
LOC_Os06g46900Os.11106.1.S1_at11/116+28462800..28465239phosphosulfolactate synthase-related protein, putative, expressed
LOC_Os06g46910Os.50189.1.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed
LOC_Os06g46910Os.50189.2.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed
LOC_Os06g46920Os.52555.1.S1_at11/116+28469176..28471150NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g46930Os.7589.1.S1_at11/116+28471589..2847378150S ribosomal protein L24, chloroplast precursor, putative, expressed
LOC_Os06g46940Os.49601.1.S1_at9/116+28476209..28479889Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os06g46950Os.7902.1.S1_at11/116+28482814..28483492EF-hand Ca2+-binding protein CCD1, putative, expressed
LOC_Os06g46960NANA6+28486836..28487644RNase H domain-containing protein, putative
LOC_Os06g46970Os.4940.1.S1_at11/116+28489033..28489686expressed protein
LOC_Os06g46980Os.56964.1.S1_at11/116+28492189..28492849expressed protein
LOC_Os06g46990Os.51830.1.S1_at11/116+28494282..28496333expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7589.1.S1_at--1038--7011Chr06:28472250..28472274 (25 bp)
GTACAAGTCATTGCAGGCCGTGAGA
LOC_Os06g46930
Os.7589.1.S1_at--150--5331Chr06:28472211..28472235 (25 bp)
GAAGTTACGCGGCTTTTTAAGCACA
LOC_Os06g46930
Os.7589.1.S1_at--736--3051Chr06:28472000..28472137 (25 bp)
AATCGTCATGATTGAAGGCCCCATT
LOC_Os06g46930
Os.7589.1.S1_at--437--2951Chr06:28471986..28472010 (25 bp)
AAGGCCCCATTCACAGCTCAAATGT
LOC_Os06g46930
Os.7589.1.S1_at--804--4831Chr06:28471971..28471995 (25 bp)
GCTCAAATGTGATGCTCTACTCAAA
LOC_Os06g46930
Os.7589.1.S1_at--478--5291Chr06:28471895..28471919 (25 bp)
GAAGGTTCGGTACCTGGTCAAGACT
LOC_Os06g46930
Os.7589.1.S1_at--1075--2811Chr06:28471820..28471844 (25 bp)
AAGTTCGGAGTGATCATGGTAGCAT
LOC_Os06g46930
Os.7589.1.S1_at--29--8651Chr06:28471796..28471820 (25 bp)
TGGGAGTCCTGCACATTTTCTGAAC
LOC_Os06g46930
Os.7589.1.S1_at--380--611Chr06:28471759..28471783 (25 bp)
ATGCCCAAATGAGTTGATGCTTTTC
LOC_Os06g46930
Os.7589.1.S1_at--1155--4911Chr06:28471666..28471690 (25 bp)
GCTTGGCTTGTTAACCAGCTACTAG
LOC_Os06g46930
Os.7589.1.S1_at--360--2971Chr06:28471641..28471665 (25 bp)
AATGGTTCAGCTACATTCGCTCATA
LOC_Os06g46930
Target Sequence 
GTACAAGTCATTGCAGGCCGTGAGAAAGGTAAAGTTNGGAGAAGTTACGCGGCTTTTTAAGCACAACAGCACTGTAATAG
TGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCC
ATTCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTGAGGATGG
AACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAA
GTTCGGAGTGATCATGGTAGCATGGGAGTCCTGCACATTTTCTGAACTGCACTTNTTGTATGCCCAAATGAGTTGATGCT
TTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCT
TGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis