Browse Element(s) Details


Os.7622.1.S1_at

Description gb:AK099545.1
DB_XREF= gi:32984754
TID=Os.7622.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-208-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033A11, full insert sequence.
FL= gb:AK104433.1 gb:AK070324.1 gb:AK099545.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4451011/11GRAM domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44470Os.5324.1.S1_at11/114+26104765..26105721Alpha-amylase/subtilisin inhibitor, putative, expressed
LOC_Os04g44480NANA4+26107320..26113457retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.4.S1_x_at6/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.4.S1_at6/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.1.S1_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.3.S1_x_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.5.S1_x_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44500Os.12986.1.S1_at11/114+26123360..26124697GRAM domain containing protein, expressed
LOC_Os04g44510Os.7622.1.S1_at11/114+26128239..26129416GRAM domain-containing protein, putative, expressed
LOC_Os04g44520OsAffx.14266.1.S1_at11/114+26132105..26133160hypothetical protein
LOC_Os04g44530Os.31464.1.S1_a_at11/114+26145064..26149295expressed protein
LOC_Os04g44540Os.25216.1.A1_at11/114+26149776..26152713Mitochondrial carrier protein, expressed
LOC_Os04g44550Os.53502.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44550OsAffx.4086.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7622.1.S1_at--1022--8271Chr04:26128785..26128809 (25 bp)
GGCATGCTCTTCATATCGACGGAGA
LOC_Os04g44510
Os.7622.1.S1_at--217--9851Chr04:26128692..26128716 (25 bp)
TACAAGGTGGCCATCCCTCTGAGGA
LOC_Os04g44510
Os.7622.1.S1_at--795--1471Chr04:26128637..26128661 (25 bp)
AGCACCGGCCGGAGCAGAAGTACGT
LOC_Os04g44510
Os.7622.1.S1_at--916--5331Chr04:26128621..26128645 (25 bp)
GAAGTACGTCCAGGTGGTGACCGAC
LOC_Os04g44510
Os.7622.1.S1_at--1153--6731Chr04:26128579..26128603 (25 bp)
GTTCATGGGATTCGTCAGCTTCCAG
LOC_Os04g44510
Os.7622.1.S1_at--917--9651Chr04:26128565..26128589 (25 bp)
TCAGCTTCCAGGTGACCCTGAAGAA
LOC_Os04g44510
Os.7622.1.S1_at--965--6411Chr04:26128503..26128527 (25 bp)
GATCTCTGATGAAACAAACGTCGAA
LOC_Os04g44510
Os.7622.1.S1_at--17--7211Chr04:26128473..26128497 (25 bp)
GTCGTCGGTTTCTTGGTCGTGTGCC
LOC_Os04g44510
Os.7622.1.S1_at--983--9191Chr04:26128452..26128476 (25 bp)
TGCCTTGTGTGTGGTCTGGTTAATC
LOC_Os04g44510
Os.7622.1.S1_at--833--9051Chr04:26128385..26128409 (25 bp)
TGCTTGGCGTTTTTGGCTTTGGAGC
LOC_Os04g44510
Os.7622.1.S1_at--1112--1471Chr04:26128363..26128387 (25 bp)
AGCAAGTCCGGTACACATGGTAGGA
LOC_Os04g44510
Target Sequence 
GGCATGCTCTTCATATCGACGGAGAGGATCGCGTTCCGGAGCGACCGGTCGCTGGCGCTGACCACCCCGAGCGGCGACAC
NGGTGCGTGTNGCNGTACAAGGTGGCCATCCCTCTGAGGAGGGTGAAGACGGCCAAGCCGAGCGAGAACAAGCACCGGCC
GGAGCAGAAGTACGTCCAGGTGGTGACCGACGACGGCTTCGAGTTCTGGTTCATGGGATTCGTCAGCTTCCAGGTGACCC
TGAAGAACCTGGAGCTGGCCGTCGCGCAGGCGCAGTGATCGATCGATCTCTGATGAAACAAACGTCGAAGTTGGGTCGTC
GGTTTCTTGGTCGTGTGCCTTGTGTGTGGTCTGGTTAATCTGTTGTGCATATGTGGTAGCGTCGTAGGTGTTTGTGGTGG
ATTGCTTGGCGTTTTTGGCTTTGGAGCAAGTCCGGTACACATGGTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis