Browse Element(s) Details


Os.7626.1.S1_at

Description gb:AK060637.1
DB_XREF= gi:32970655
TID=Os.7626.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D01, full insert sequence.
FL= gb:AK069123.1 gb:AK060637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3130011/11Chaperone clpB 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31270OsAffx.25314.1.S1_at11/113+17766495..17768110hypothetical protein
LOC_Os03g31270OsAffx.32036.1.S1_at4/113+17766495..17768110hypothetical protein
LOC_Os03g31280OsAffx.25315.1.S1_at11/113+17773209..17774276hypothetical protein
LOC_Os03g31290Os.53722.1.S1_at11/113+17779080..17782606ubiquitin-fusion protein, putative, expressed
LOC_Os03g31300Os.7626.1.S1_at11/113+17787104..17794190Chaperone clpB 1, putative, expressed
LOC_Os03g31310Os.11688.1.S1_at11/113+17794911..17799265circadian clock coupling factor, putative, expressed
LOC_Os03g31320Os.49432.1.S1_at11/113+17805610..17808599RING zinc finger protein, putative, expressed
LOC_Os03g31340OsAffx.3380.1.S1_x_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31340OsAffx.3380.1.S1_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31360Os.8013.1.S1_at11/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360Os.12807.2.S1_x_at2/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360OsAffx.27508.71.S1_s_at1/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0009408biological_processresponse to heat
GO:0009658biological_processchloroplast organization and biogenesis
GO:0043335biological_processprotein unfolding
GO:0045037biological_processprotein import into chloroplast stroma
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7626.1.S1_at--779--2591Chr03:17793640..17793664 (25 bp)
AACGAGCTGGCGAAGGGTATCCTGA
LOC_Os03g31300
Os.7626.1.S1_at--550--951Chr03:17793683..17793707 (25 bp)
AGGACAGCATCCTGGTAGACACCCA
LOC_Os03g31300
Os.7626.1.S1_at--1143--1011Chr03:17793707..17793731 (25 bp)
AGGTCACCGTGCCATCTAATGGTCA
LOC_Os03g31300
Os.7626.1.S1_at--773--9771Chr03:17793723..17793747 (25 bp)
TAATGGTCAGCTCCCTCAGCAAAAG
LOC_Os03g31300
Os.7626.1.S1_at--781--3731Chr03:17793737..17793761 (25 bp)
CTCAGCAAAAGCTCGTTTTCCACAA
LOC_Os03g31300
Os.7626.1.S1_at--375--5771Chr03:17793796..17793820 (25 bp)
GACGAGAAATTTTTGCCGGCTGTTT
LOC_Os03g31300
Os.7626.1.S1_at--1093--10771Chr03:17793819..17793843 (25 bp)
TTGATGGGCCGAACTTTTAGCAGAT
LOC_Os03g31300
Os.7626.1.S1_at--886--5611Chr03:17793900..17793924 (25 bp)
GACACAATTTCCCTTGCTAGTTCAA
LOC_Os03g31300
Os.7626.1.S1_at--132--171Chr03:17793961..17793985 (25 bp)
ATTTTGTCTCTAATATTTCCAGCGA
LOC_Os03g31300
Os.7626.1.S1_at--1058--5571Chr03:17793984..17794008 (25 bp)
GAAATGTCTTCACATCGCCTGTGCG
LOC_Os03g31300
Os.7626.1.S1_at--903--10791Chr03:17794054..17794078 (25 bp)
TTGTCAGCCGTGTTCGTCAGTTGGA
LOC_Os03g31300
Target Sequence 
AACGAGCTGGCGAAGGGTATCCTGAGAGGTGATTTCAAGGACGAGGACAGCATCCTGGTAGACACCCAGGTCACCGTGCC
ATCTAATGGTCAGCTCCCTCAGCAAAAGCTCGTTTTCCACAAAATGAGTGAAGAATCCGCACCAGCTGCTGCTGAAGACG
AGAAATTTTTGCCGGCTGTTTGATGGGCCGAACTTTTAGCAGATGAGGAATAAAATGTAGATAGAAGATTAGCAAACTTG
AGTGGATAGCATAGTATACAGACACAATTTCCCTTGCTAGTTCAACATTACATAAGCACAAAGTCTGTGCTGAGAAATGT
TATTTTGTCTCTAATATTTCCAGCGAAATGTCTTCACATCGCCTGTGCGCAAGGATAAGCTTTCGGGTTTNTCGTAGCTG
NGTAACCTCTTGNCTTGTCAGCCGTGTTCGTCAGTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis