Browse Element(s) Details


Os.7644.1.S1_at

Description gb:AK060515.1
DB_XREF= gi:32970533
TID=Os.7644.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7644 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A01, full insert sequence.
FL= gb:AK060515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0963011/113-oxoacyl-synthase I, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09570Os.14676.2.S1_at11/116+4869882..4873712nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09570Os.14676.1.S1_a_at11/116+4869882..4873712nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09580Os.35344.3.S1_x_at9/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580OsAffx.22940.5.S1_at7/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580Os.35344.18.S1_x_at6/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580OsAffx.22940.5.S1_x_at5/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09600OsAffx.27536.1.S1_x_at11/116+4884948..4885654expressed protein
LOC_Os06g09610Os.22674.1.S1_at10/116+4887550..4889730AhpC/TSA family protein, expressed
LOC_Os06g09620OsAffx.27533.1.S1_at11/116+4891310..4894722expressed protein
LOC_Os06g09630Os.7644.1.S1_at11/116+4896181..48995653-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os06g09640NANA6+4901972..4904936retrotransposon protein, putative, unclassified
LOC_Os06g09650NANA6+4905808..4911549retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0006636biological_processfatty acid desaturation
GO:0009536cellular_componentplastid
GO:0004312molecular_functionfatty-acid synthase activity
GO:0004315molecular_function3-oxoacyl-[acyl-carrier protein] synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7644.1.S1_at--921--5251Chr06:4896731..4896837 (25 bp)
GAATGTTGGTATCTCGAATTCCTTT
LOC_Os06g09630
Os.7644.1.S1_at--435--91Chr06:4896714..4896738 (25 bp)
ATTCCTTTGGATTTGGTGGACACAA
LOC_Os06g09630
Os.7644.1.S1_at--499--2651Chr06:4896664..4896688 (25 bp)
AAGCCTTAACTTGCTGCATGTTACA
LOC_Os06g09630
Os.7644.1.S1_at--133--751Chr06:4896585..4896609 (25 bp)
ATGTCTTTTCTTTGGGTGAAGCAAC
LOC_Os06g09630
Os.7644.1.S1_at--914--10731Chr06:4896553..4896577 (25 bp)
TTGACAGCCGGCAACGTTACAATGA
LOC_Os06g09630
Os.7644.1.S1_at--145--10491Chr06:4896515..4896539 (25 bp)
TTAATTCCATTTTAGGCACTCCCAT
LOC_Os06g09630
Os.7644.1.S1_at--729--5091Chr06:4896500..4896524 (25 bp)
GCACTCCCATCTTCCATTGAAATTG
LOC_Os06g09630
Os.7644.1.S1_at--414--2411Chr06:4896376..4896400 (25 bp)
AAAAGTTAGATCTCCTGTTCCATAG
LOC_Os06g09630
Os.7644.1.S1_at--782--4931Chr06:4896330..4896354 (25 bp)
GCTTGTCTGTAATTTGTATCTGGTC
LOC_Os06g09630
Os.7644.1.S1_at--334--8691Chr06:4896275..4896299 (25 bp)
TGTCCAGTATGCCAATGTCCGTCTA
LOC_Os06g09630
Os.7644.1.S1_at--1129--6791Chr06:4896231..4896255 (25 bp)
GTTTTGCTTAACTTGCTCGGCTAAT
LOC_Os06g09630
Target Sequence 
GAATGTTGGTATCTCGAATTCCTTTGGATTTGGTGGACACAATTCAGTTGTAGTATTTGCNCCATTTAAGCCTTAACTTG
CTGCATGTTACACAAATCTTGGCCAGAATAGTAAATGTCTTTTCAGGAAGTTCTGAGTTATTNTGCATGTCTTTTCTTTG
GGTGAAGCAACTGTTGATTTGACAGCCGGCAACGTTACAATGAACTGGATCTGAGATTAATTCCATTTTAGGCACTCCCA
TCTTCCATTGAAATTGAGAGNNCTCTGTATAACGTTGTTTTGCATAATTTGCAATTGATTNCTACCTACTTCTGTATAAT
GGAAAATGTGGGAATTTCTAGAATTGTCATGTAGAAGCAAAAGTTAGATCTCCTGTTCCATAGAAATGCTTGAGCCAAGG
AATTGCTTGTCTGTAATTTGTATCTGGTCTAGAAAAATGTTCTCNTTCANTTTTTTTTNCTTGTCCAGTATGCCAATGTC
CGTCTAGTGGAATAAAATGTATTCAGTTTTGCTTAACTTGCTCGGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis