Browse Element(s) Details


Os.7718.1.S1_at

Description gb:AK071850.1
DB_XREF= gi:32981873
TID=Os.7718.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013087H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023116E13, full insert sequence.
FL= gb:AK071850.1 gb:AK099221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2793011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27880Os.6000.3.S1_x_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27880Os.6000.2.S1_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27880Os.6000.1.S1_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27890Os.50475.1.S1_at11/115+16198490..16202163expressed protein
LOC_Os05g27900OsAffx.27048.1.S1_at11/115+16205034..16205498hypothetical protein
LOC_Os05g27910OsAffx.27049.1.S1_at11/115+16206606..16207526hypothetical protein
LOC_Os05g27920Os.10964.1.S1_at10/115+16211369..16218543phox domain-containing protein, putative, expressed
LOC_Os05g27930Os.7718.1.S1_at11/115+16218769..16222240AP2 domain containing protein, expressed
LOC_Os05g27940Os.12203.1.S1_at11/115+16224545..1622799040S ribosomal protein S7, putative, expressed
LOC_Os05g27950Os.7586.1.S1_at11/115+16228363..16232319cp protein, putative, expressed
LOC_Os05g27960Os.7077.1.S1_at11/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27960Os.27744.1.S1_at1/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27970OsAffx.27050.1.S1_x_at11/115+16242826..16243626hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7718.1.S1_at--425--4351Chr05:16219478..16219502 (25 bp)
CCAGAGGACCAAGGAGATTATTGTT
LOC_Os05g27930
Os.7718.1.S1_at--77--8071Chr05:16219473..16219497 (25 bp)
GGACCAAGGAGATTATTGTTTTGAT
LOC_Os05g27930
Os.7718.1.S1_at--163--8911Chr05:16219435..16219459 (25 bp)
TGAGAATGATGGAAGCTGACCCTAC
LOC_Os05g27930
Os.7718.1.S1_at--1019--6231Chr05:16219428..16219452 (25 bp)
GATGGAAGCTGACCCTACGAACGAG
LOC_Os05g27930
Os.7718.1.S1_at--93--4651Chr05:16219421..16219445 (25 bp)
GCTGACCCTACGAACGAGGGTTTGT
LOC_Os05g27930
Os.7718.1.S1_at--334--5571Chr05:16219395..16219419 (25 bp)
GAAAGGCGACAAAGATGGATCAGAC
LOC_Os05g27930
Os.7718.1.S1_at--140--5631Chr05:16219388..16219412 (25 bp)
GACAAAGATGGATCAGACGCCATCC
LOC_Os05g27930
Os.7718.1.S1_at--846--3751Chr05:16219298..16219322 (25 bp)
CTCAGGTCTGATGAGCCAGCATGGT
LOC_Os05g27930
Os.7718.1.S1_at--496--7951Chr05:16219127..16219151 (25 bp)
GGATCAGCAAGAGAAACACTGGACC
LOC_Os05g27930
Os.7718.1.S1_at--232--791Chr05:16218909..16218933 (25 bp)
ATGTGTATATATTCCAAGCGTTCTT
LOC_Os05g27930
Os.7718.1.S1_at--982--10171Chr05:16218904..16218928 (25 bp)
TATATATTCCAAGCGTTCTTCAGCC
LOC_Os05g27930
Target Sequence 
CCAGAGGACCAAGGAGATTATTGTTTTGATATTGATGAGATGCTGAGAATGATGGAAGCTGACCCTACGAACGAGGGTTT
GTGGAAAGGCGACAAAGATGGATCAGACGCCATCCTGGAGCTTGGCCAGGATGAACCTTTCTACTACGAAGGGGTTGATC
CAGGCATGCTGGACAACTTGCTCAGGTCTGATGAGCCAGCATGGTTATNGGCAGATCCTGCGATGTTCATCTCCGGTGGC
TTCGAAGATGACTCTCAGTTCTTTGAGGGCTTGTGATTTCCCCTTGGCGGCAGCCGGCCATACTAAAATTTTCTGGTGCT
TTGGTCGGCTAGCTCCTGCACATCGCCCTCAGGATCAGCAAGAGAAACACTGGACCGGATTGGGTTCGTTGGNGGAACTG
GATGAGCATCTAGTAGCTAAGGAAAAAAGATCCTTTTATTTAGTTCTGTAGGCAATGGAACTCCTTGAGAACTCCGTTTC
AGTGTTTGTTAATTTGATAACGCTTGCTTGTTTGTGTGTGTATATCGATCTCTTTTGAAGCAATGAGAAAAAAAAAANGG
ACTGNAGAAAATGTGTATATATTCCAAGCGTTCTTCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis