Browse Element(s) Details


Os.7734.2.S1_x_at

Description gb:AK059259.1
DB_XREF= gi:32969277
TID=Os.7734.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-A05, full insert sequence.
FL= gb:AK059259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0197011/11THO complex subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01940Os.7327.4.S1_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.1.S2_a_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.2.S1_x_at11/113+552563..558928expressed protein
LOC_Os03g01950OsAffx.25962.1.S1_at11/113+570644..576389transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g01960Os.6668.1.S1_at11/113+577265..578305expressed protein
LOC_Os03g01970Os.7734.2.S1_x_at11/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01970Os.7734.1.S1_at11/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01970Os.54579.1.S1_at1/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01980Os.49574.1.S1_at11/113+588226..592776kinase interacting protein, putative, expressed
LOC_Os03g01990NANA3+599568..601964LysM domain containing protein, expressed
LOC_Os03g02010Os.52141.1.S1_at11/113+610993..614678DNA cytosine methyltransferase Zmet3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7734.2.S1_x_at--206--1431Chr03:586902..586926 (25 bp)
AGAACTGTTGCCACCTGAAGTCCGT
LOC_Os03g01970
Os.7734.2.S1_x_at--649--2831Chr03:586930..586954 (25 bp)
AAGTTTTATTCGAAGCCTGGTGACA
LOC_Os03g01970
Os.7734.2.S1_x_at--122--2471Chr03:587009..587123 (25 bp)
AACAACAGGTTGTTTCAGCCACACC
LOC_Os03g01970
Os.7734.2.S1_x_at--536--7931Chr03:587178..587202 (25 bp)
GGATTCTGATAATGCCGCGATCGAT
LOC_Os03g01970
Os.7734.2.S1_x_at--873--5431Chr03:587322..587346 (25 bp)
GAACCTCTGCCGGAAGATTTTGTAG
LOC_Os03g01970
Os.7734.2.S1_x_at--273--171Chr03:587338..587362 (25 bp)
ATTTTGTAGTATCCTGTTGCCGACG
LOC_Os03g01970
Os.7734.2.S1_x_at--7--8811Chr03:587352..587376 (25 bp)
TGTTGCCGACGTTTCTACTGAGATC
LOC_Os03g01970
Os.7734.2.S1_x_at--1123--6371Chr03:587373..587397 (25 bp)
GATCGCCCATCTTTAGAGTTACTGT
LOC_Os03g01970
Os.7734.2.S1_x_at--138--5671Chr03:587413..587437 (25 bp)
GACATCCAGGCTCCAGATTGTTTTA
LOC_Os03g01970
Os.7734.2.S1_x_at--154--411Chr03:587492..587516 (25 bp)
ATCAGTAGCTGACGCCATGCCTTAG
LOC_Os03g01970
Os.7734.2.S1_x_at--704--591Chr03:587508..587532 (25 bp)
ATGCCTTAGCCTGACATGTGTATAT
LOC_Os03g01970
Target Sequence 
AGAACTGTTGCCACCTGAAGTCCGTTCCAAGTTTTATTCGAAGCCTGGTGACAAGGCTAAACGACCTAAGAGGGAAGACC
CAAAAGGCACTTCAGCCCAACCCAAGGAACAACAGGTTGTTTCAGCCACACCGGAGACCGACGGTGGCGGTAGCGGGGCT
GAACCAGAAGAAGGTGCTGTGCCAATGGATTCTGATAATGCCGCGATCGATGAAGGCCGGAAGCAGAGCCCAGAGGAGGT
GTCTGGACCTGAAAGCGGGCAGTGCGAGGCTGAAGCCGATGGCGAAGATAACATGAAAAATGAGGCTAGTAAAGACGGTC
CATCCGCATAGAACCTCTGCCGGAAGATTTTGTAGTATCCTGTTGCCGACGTTTCTACTGAGATCGCCCATCTTTAGAGT
TACTGTGACCCCCCAGATTGAGACATCCAGGCTCCAGATTGTTTTAAAGAAGATAGAGAGACATGTATCTAGTCCACTGA
ACACAGAATTTTAATGAATCATCAGTAGCTGACGCCATGCCTTAGCCTGACATGTGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7734.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis