Browse Element(s) Details


Os.7756.1.S1_at

Description gb:AK060639.1
DB_XREF= gi:32970657
TID=Os.7756.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative stress-responsive protein (OSJNBb0091N21.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D09, full insert sequence.
FL= gb:AK060639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3650010/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36460NANA10+19175966..19179679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g36470Os.6154.1.S1_a_at11/1110+19182941..19187182methionine aminopeptidase 1, putative, expressed
LOC_Os10g36470OsAffx.28284.1.S1_at3/1110+19182941..19187182methionine aminopeptidase 1, putative, expressed
LOC_Os10g36490Os.17209.1.S1_at11/1110+19187274..19195752tubulin folding cofactor D, putative, expressed
LOC_Os10g36480Os.14040.1.S1_at11/1110+19195983..19198906expressed protein
LOC_Os10g36500Os.7756.2.S1_x_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.2.S1_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.1.S1_at10/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36510OsAffx.30486.1.S1_at1/1110+19204322..19206481hypothetical protein
LOC_Os10g36520Os.46807.1.S1_at11/1110+19209997..19210891expressed protein
LOC_Os10g36530Os.27528.1.S1_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.27528.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_at7/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36550Os.26728.1.S1_a_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.2.S1_x_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.2.S1_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.3.S1_x_at10/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.3.S1_at1/1110+19225446..19228841expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7756.1.S1_at--44--2391Chr10:19200861..19200885 (25 bp)
AAACGTCTCATGTATCAGGCACAAA
LOC_Os10g36500
Os.7756.1.S1_at--918--931Chr10:19200762..19200786 (25 bp)
AGGCAATAATGCAAGTCGATCTACT
LOC_Os10g36500
Os.7756.1.S1_at--893--7211Chr10:19200748..19200772 (25 bp)
GTCGATCTACTGCTAAACCACAGGA
LOC_Os10g36500
Os.7756.1.S1_at--351--2371Chr10:19200734..19200758 (25 bp)
AAACCACAGGAGCACAACACAATAG
LOC_Os10g36500
Os.7756.1.S1_at--529--7851Chr10:19200641..19200665 (25 bp)
GGTAGTACACTCAAAGTTGTCCATG
LOC_Os10g36500
Os.7756.1.S1_at--48--5211Chr10:19200616..19200640 (25 bp)
GAATTGTTGCCATCCTTTGTGTAAT
LOC_Os10g36500
Os.7756.1.S1_at--992--211Chr10:19200566..19200590 (25 bp)
ATTTGTGTGCACACTGGTGCTGCAT
LOC_Os10g36500
Os.7756.1.S1_at--996--3891Chr10:19200553..19200577 (25 bp)
CTGGTGCTGCATTGTACTTGACTGT
LOC_Os10g36500
Os.7756.1.S1_at--735--1331Chr10:19200517..19200541 (25 bp)
AGAGTCTATTACCTTCAGCTGTCTT
LOC_Os10g36500
Os.7756.1.S1_at--1108--10271Chr10:19200494..19200518 (25 bp)
TTTGCTGAGAACATCAGGCCCCAGA
LOC_Os10g36500
Os.7756.1.S1_at--462--871Chr10:19200479..19200503 (25 bp)
AGGCCCCAGAGCGAGTTCAGCAATC
NONE
Target Sequence 
AAACGTCTCATGTATCAGGCACAAATATCTGCAGAGTGCATAAGCAAAGCACAGACTGAAGTTGATTTGGTTCTTAGGAC
AATTAATGTGAAGGGCTGAAGGCAATAATGCAAGTCGATCTACTGCTAAACCACAGGAGCACAACACAATAGATAGACAA
AGTTAGTTATGAGTCACAGTCAGAAATCAGAATAATGCATGCCAACATGCATGGTAGATTGGTAGTACACTCAAAGTTGT
CCATGGAATTGTTGCCATCCTTTGTGTAATAGTGTAGGTAAGGCTTAAACTGATCATTTGTGTGCACACTGGTGCTGCAT
TGTACTTGACTGTTAGTACTTAGTAGAGTCTATTACCTTCAGCTGTCTTTGCTGAGAACATCAGGCCCCAGAGCGAGTTC
AGCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis