Browse Element(s) Details


Os.7772.1.S1_at

Description gb:AK071765.1
DB_XREF= gi:32981788
TID=Os.7772.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112N11, full insert sequence.
FL= gb:AK071765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0884011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08810Os.54870.1.S1_at10/116+4403147..4405035NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08820OsAffx.15318.1.S1_at11/116+4409057..4410391Zinc finger, C3HC4 type family protein
LOC_Os06g08830OsAffx.15319.1.S1_at10/116+4417695..4419368UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g08840Os.7772.1.S1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08840Os.7772.2.A1_x_at11/116+4427667..4431315RNA recognition motif family protein, expressed
LOC_Os06g08850Os.26452.1.A1_at11/116+4439849..4441838Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08850OsAffx.15320.1.S1_x_at11/116+4439849..4441838Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os06g08860Os.33759.1.S1_at11/116+4442022..4445511UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative, expressed
LOC_Os06g08870OsAffx.27518.3.S1_x_at11/116+4448305..4448774hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0016607cellular_componentnuclear speck
GO:0003676molecular_functionnucleic acid binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7772.1.S1_at--602--8411Chr06:4430583..4430607 (25 bp)
GGCCGACTACGGCTACCAGTTATAT
LOC_Os06g08840
Os.7772.1.S1_at--1040--10411Chr06:4430602..4430626 (25 bp)
TTATATCTTCGTGGTTGTGTTCTTC
LOC_Os06g08840
Os.7772.1.S1_at--675--9331Chr06:4430649..4430673 (25 bp)
TCGCCTGCTTCATGCAAACGTCATA
LOC_Os06g08840
Os.7772.1.S1_at--600--9571Chr06:4430703..4430727 (25 bp)
TCTTCGTGATCCATATACTTCGTTG
LOC_Os06g08840
Os.7772.1.S1_at--313--3451Chr06:4430749..4430773 (25 bp)
CAGTAATCGCCTTCTTTTATCGTAA
LOC_Os06g08840
Os.7772.1.S1_at--655--3111Chr06:4430778..4430802 (25 bp)
AATTTGGTCATATTGTCTTCGGAAC
LOC_Os06g08840
Os.7772.1.S1_at--441--6731Chr06:4430842..4430866 (25 bp)
GTTCTTCGTAGGCATAGACTCCAGA
LOC_Os06g08840
Os.7772.1.S1_at--673--5191Chr06:4430877..4430901 (25 bp)
GCAATCCGAGGAGCTGCAGTATTCA
LOC_Os06g08840
Os.7772.1.S1_at--228--1251Chr06:4430901..4430925 (25 bp)
AGTTGGATGATTTACACCCCTGCCC
LOC_Os06g08840
Os.7772.1.S1_at--746--8251Chr06:4431043..4431066 (24 bp)
GGCAGCCAGAGGTTTTGCTCTCCAT
LOC_Os06g08840
Os.7772.1.S1_at--727--10631Chr06:4431177..4431201 (25 bp)
TTCCCCGACGTTTGATTTCATTTGC
LOC_Os06g08840
Target Sequence 
GGCCGACTACGGCTACCAGTTATATCTTCGTGGTTGTGTTCTTCGCTCTTCATTCTACGCGCGCCCTCGCCTGCTTCATG
CAAACGTCATACAGCCCCATTAGTTGCTGCCTACAACACCTCTTCGTGATCCATATACTTCGTTGGAGATGCTGCTCATC
AGAAAACAGTAATCGCCTTCTTTTATCGTAATAAAAATTTGGTCATATTGTCTTCGGAACAACAGTAAGTGCAGCATCTG
GAAGTATTGGTGAAACAAAGTTCTTCGTAGGCATAGACTCCAGAAAATGAATCTGCAATCCGAGGAGCTGCAGTATTCAG
TTGGATGATTTACACCCCTGCCCAGTCCGTCACGCCTTGTGGCAGCCAGAGGTTTTGCTCTCCATGATCTTCCTTCTGCA
CTCGCTCAGCCTGCCTCAGCCTACCCTGCGTGCTGCCGTCTAGCCAAGAGCCTTCGCCACCACTGCTTCCCCGACGTCGC
CTTCGTTTCCATTGCTTCCCCGACGTTTGATTTCATTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis