Browse Element(s) Details


Os.7779.1.S1_x_at

Description gb:AK107666.1
DB_XREF= gi:32992875
TID=Os.7779.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-H03, full insert sequence.
FL= gb:AK107666.1 gb:AK105841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0157011/11Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g140501/11MAC/Perforin domain containing protein, expressed
LOC_Os01g109901/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01540Os.27339.1.S1_at11/115+295261..298816retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01550Os.19616.1.S1_at11/115+299203..302456Zinc finger, C2H2 type family protein, expressed
LOC_Os05g01560Os.37899.1.S1_at11/115+304176..306192Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os05g01570Os.7779.1.S1_x_at11/115+316959..318821Integral membrane protein DUF6 containing protein, expressed
LOC_Os05g01580OsAffx.14491.1.S1_at11/115+323538..325468Integral membrane protein DUF6 containing protein
LOC_Os05g01590Os.54343.1.S1_at10/115+329682..332081DnaJ domain containing protein, expressed
LOC_Os05g01600Os.11740.1.S1_at11/115+332178..334669Actin-97, putative, expressed
LOC_Os05g01610OsAffx.26679.1.S1_at11/115+340542..344003Chromosome condensation factor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0008219biological_processcell death
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7779.1.S1_x_at--32--1511Chr05:318261..318285 (25 bp)
AGCACGCTCCAGTCGCTGCTGCTGG
LOC_Os05g01570
Os.7779.1.S1_x_at--347--2151Chr05:318358..318382 (25 bp)
ACACGGGCTTCGTCGTCACCGGCGT
LOC_Os05g01570
Os.7779.1.S1_x_at--479--9232Chr05:318394..318418 (25 bp)
TCCAGGCGTGGTGCATCGAGAAGAA
LOC_Os05g01570
Os.7779.1.S1_x_at--903--9473Chr05:318451..318475 (25 bp)
TCTGCTTCGTCTTCACCATCTTCTG
LOC_Os05g01570
Os.7779.1.S1_x_at--497--2511Chr05:318582..318606 (25 bp)
AACATCAATATGCAGCTCACGCTCG
LOC_Os05g01570
Os.7779.1.S1_x_at--617--4511Chr05:318612..318636 (25 bp)
GCCGCTTCTACCGAACAAGTGAAAC
LOC_Os05g01570
Os.7779.1.S1_x_at--906--4091Chr05:318623..318647 (25 bp)
CGAACAAGTGAAACAGCGGCAAGAG
LOC_Os05g01570
Os.7779.1.S1_x_at--1107--9692Chr06:7834448..7834467 (20 bp)
TCACAAGATGGAGATCGCCGGCGGC
LOC_Os06g14050
Os.7779.1.S1_x_at--1047--9311Chr05:318726..318750 (25 bp)
TCGCCGGAGCAACAAGTGTAGCTAG
LOC_Os05g01570
Os.7779.1.S1_x_at--449--7431Chr05:318741..318765 (25 bp)
GTGTAGCTAGCTTTTGTACCTAATA
LOC_Os05g01570
Os.7779.1.S1_x_at--835--4851Chr05:318746..318770 (25 bp)
GCTAGCTTTTGTACCTAATAAATGA
LOC_Os05g01570
Target Sequence 
AGCACGCTCCAGTCGCTGCTGCTGGCGGCGGCGGTGGTGCGGGCCGACCCGGCGGCGTGGCGGCTGCGCCTCGACGCCGG
CCTCCTCGCCGTCGCCTACACGGGCTTCGTCGTCACCGGCGTCTCCTTCTACCTCCAGGCGTGGTGCATCGAGAAGAAGG
GCCCCGTGTTCCTGGCCATGTCCAACCCGCTCTGCTTCGTCTTCACCATCTTCTGCTCCTCCTTCTTCCTCGCCGAGATC
GTCCACCTCGGCAGCATCGTCGGCGGCGTCCTGCTCGTCGCCGGCCTCTACAGCGTGCTCTGGGGTAAGAGCAAGGAGCA
CAACATCAATATGCAGCTCACGCTCGCCGCCGCCGCTTCTACCGAACAAGTGAAACAGCGGCAAGAGGAAGATCACAAGA
TGGAGATCGCCGGCGGCGACGAGCAGGAGGAGATCAAGCAGCAGCAGCAGGGGAAAATGGCGGCGTCGCCGGAGCAACAA
GTGTAGCTAGCTTTTGTACCTAATAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7779.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis