Browse Element(s) Details


Os.7800.1.S1_at

Description gb:AK100951.1
DB_XREF= gi:32986160
TID=Os.7800.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.7800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0691E06.20 (P0691E06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139J15, full insert sequence.
FL= gb:AK100951.1 gb:AK072549.1 gb:AK106023.1 gb:AK100942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5862011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58580Os.8591.1.S1_at11/111+34195990..34198683latex-abundant protein, putative, expressed
LOC_Os01g58590NANA1+34203653..34205684hypothetical protein
LOC_Os01g58600Os.22639.1.S1_at4/111+34208929..34209138hypothetical protein
LOC_Os01g58610OsAffx.11650.1.S1_at11/111+34211768..34214261Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os01g58620Os.7800.1.S1_at11/111+34216946..34218575expressed protein
LOC_Os01g58630Os.36426.1.S1_at11/111+34220608..34222844pentatricopeptide, putative, expressed
LOC_Os01g58640Os.11682.1.S1_at11/111+34224228..34231210Ser/Thr protein phosphatase family protein, expressed
LOC_Os01g58650OsAffx.21682.1.S1_at11/111+34233218..34236440Protease inhibitor/seed storage/LTP family protein
LOC_Os01g58660Os.16752.1.S1_at11/111+34238146..34238836expressed protein
LOC_Os01g58670Os.55436.1.S1_at11/111+34241055..34245283hypothetical protein
LOC_Os01g58670Os.16744.1.S1_at7/111+34241055..34245283hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7800.1.S1_at--370--8611Chr01:34217355..34217379 (25 bp)
TGGTGCTGTGCTGGTGTCTGTTCTT
LOC_Os01g58620
Os.7800.1.S1_at--879--6731Chr01:34217336..34217360 (25 bp)
GTTCTTGTCTGCGTCAATTTGCTGG
LOC_Os01g58620
Os.7800.1.S1_at--99--8311Chr01:34217311..34217335 (25 bp)
GGCTACTCGTGCAGAGCGTGTTTTA
LOC_Os01g58620
Os.7800.1.S1_at--18--8751Chr01:34217293..34217317 (25 bp)
TGTTTTACTACGCTTGCAAGGCCTT
LOC_Os01g58620
Os.7800.1.S1_at--124--6391Chr01:34217252..34217276 (25 bp)
GATCGAAGCGCATTGTATGAGCATC
LOC_Os01g58620
Os.7800.1.S1_at--284--8911Chr01:34217235..34217259 (25 bp)
TGAGCATCTCGGAGGGTACCTTGGT
LOC_Os01g58620
Os.7800.1.S1_at--374--8611Chr01:34217214..34217238 (25 bp)
TGGTGAATACGTGCCTCTCAAGAGC
LOC_Os01g58620
Os.7800.1.S1_at--946--1971Chr01:34217150..34217174 (25 bp)
ACTGCTGGATCTTGCTCTAAAGAAG
LOC_Os01g58620
Os.7800.1.S1_at--100--6811Chr01:34217113..34217137 (25 bp)
GTTTTGTGCTCTTCTATCTAGTTCA
LOC_Os01g58620
Os.7800.1.S1_at--861--10271Chr01:34217002..34217026 (25 bp)
TTTGCATTATTGTGTCTCTGTTTAC
LOC_Os01g58620
Os.7800.1.S1_at--42--2091Chr01:34216979..34217003 (25 bp)
ACATTATTTTCCTGTCATTCATGAC
LOC_Os01g58620
Target Sequence 
TGGTGCTGTGCTGGTGTCTGTTCTTGTCTGCGTCAATTTGCTGGGGCTACTCGTGCAGAGCGTGTTTTACTACGCTTGCA
AGGCCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCTCGGAGGGTACCTTGGTGAATACGTGCCTCTC
AAGAGCAATATTCAGATGGAGAACCTTGATGCATAAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGAT
TTGTTTTGTGCTCTTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGTCTATGCAAT
GGAACAGAGATGCATAAGGAAAATTCTCTTTCTTTTGCATTATTGTGTCTCTGTTTACATTATTTTCCTGTCATTCATGA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis