Browse Element(s) Details


Os.7806.1.S1_at

Description gb:AK121520.1
DB_XREF= gi:37991143
TID=Os.7806.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028J23, full insert sequence.
FL= gb:AK105400.1 gb:AK121520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3998011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39910NANA4+23550973..23553357D-mannose binding lectin family protein
LOC_Os04g39930Os.11392.2.S1_at1/114+23560082..23562487D-mannose binding lectin family protein
LOC_Os04g39940OsAffx.26397.1.S1_x_at11/114+23563270..23565722hypothetical protein
LOC_Os04g39940OsAffx.26397.1.S1_at11/114+23563270..23565722hypothetical protein
LOC_Os04g39950Os.27211.1.S1_at10/114+23566409..23568891expressed protein
LOC_Os04g39960OsAffx.26398.1.S1_at11/114+23570322..23571170expressed protein
LOC_Os04g39970OsAffx.26399.1.S1_at11/114+23571692..23573697vacuolar sorting protein 9 domain-containing protein, putative, expressed
LOC_Os04g39980Os.7806.1.S1_at11/114+23576312..23578418oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g39990NANA4+23581685..23587839retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_x_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40010OsAffx.14212.1.S1_at11/114+23596314..23597951hypothetical protein
LOC_Os04g40020Os.56993.1.S1_at11/114+23599462..23600314expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019761biological_processglucosinolate biosynthesis
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7806.1.S1_at--875--8331Chr04:23576993..23577017 (25 bp)
GGCTGCACAACGTGAAGCACAGGGT
LOC_Os04g39980
Os.7806.1.S1_at--610--8951Chr04:23576769..23576793 (25 bp)
TGACACCTGGCCACGGTCCATTGTC
LOC_Os04g39980
Os.7806.1.S1_at--850--6811Chr04:23576738..23576762 (25 bp)
GTTTATTACGCGGAGTGCTCACTGC
LOC_Os04g39980
Os.7806.1.S1_at--1144--7311Chr04:23576724..23576748 (25 bp)
GTGCTCACTGCTGACTAGAATGTCC
LOC_Os04g39980
Os.7806.1.S1_at--213--10031Chr04:23576709..23576733 (25 bp)
TAGAATGTCCATTAGGCCTCCCTGT
LOC_Os04g39980
Os.7806.1.S1_at--756--4251Chr04:23576689..23576713 (25 bp)
CCTGTATGGCCGTGTCGATTCTGAA
LOC_Os04g39980
Os.7806.1.S1_at--327--2451Chr04:23576660..23576684 (25 bp)
AAAATCTTCGACGTACGACAGTGAA
LOC_Os04g39980
Os.7806.1.S1_at--459--351Chr04:23576590..23576614 (25 bp)
ATAAGTCTTTTGTTTGGCTGGAGGA
LOC_Os04g39980
Os.7806.1.S1_at--854--6071Chr04:23576534..23576558 (25 bp)
GAGTTTGTGAGTAAATTCCCACCTT
LOC_Os04g39980
Os.7806.1.S1_at--523--10051Chr04:23576450..23576474 (25 bp)
TAGTTGAATCTTACACGTCCACCAT
LOC_Os04g39980
Os.7806.1.S1_at--732--7271Chr04:23576434..23576458 (25 bp)
GTCCACCATCACGTAAAATCTAATT
LOC_Os04g39980
Target Sequence 
GGCTGCACAACGTGAAGCACAGGGTGCAGTGCGTGGCGGCGGTGCCNGCNGCGTNTCGATCGCCATGTTCNCTGCTGGCN
GCCCAAGGACGACACGGTGAGCGCGCCGGGGGAGCTGGTGGACGGCGAGCACCCGCGCCGGTACAGGGAGTTCAAGTACG
ACGACTACCGGAGGCTCCGGCTGTCCACCGGCGAGCGCGCCGGCGAGGCGCTCGCGCGTCTGGCGGCCTGACACCTGGCC
ACGGTCCATTGTCGCNACCGTTTATTACGCGGAGTGCTCACTGCTGACTAGAATGTCCATTAGGCCTCCCTGTATGGCCG
TGTCGATTCTGAACAATAAAATCTTCGACGTACGACAGTGAAAAAAATTTGTAAAGGATGCTGAGGGGATGGGAATTTTA
GGGGTTAATAAGTCTTTTGTTTGGCTGGAGGAGATGATGAGTTGTAGGANTAACTGGAAGGTGGAGTTTGTGAGTAAATT
CCCACCTTTTTAATATAGAGGACTATAATTGGGAGGAAAGTCCCTTTCNGAGCTCTCTAATTTTAGTTAGTTGAATCTTA
CACGTCCACCATCACGTAAAATCTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis