Browse Element(s) Details


Os.7826.2.A1_at

Description gb:CB676045
DB_XREF= gi:29679770
DB_XREF=OSJNEe12B11.r
CLONE=OSJNEe12B11
TID=Os.7826.2
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7826 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T48538 (A.thaliana) T48538 hypothetical protein T22P22.180 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1073011/11multidrug resistance associated protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10700OsAffx.30350.1.S1_at1/115+5866463..5871651retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g10710NANA5+5873281..5876079hypothetical protein
LOC_Os05g10720OsAffx.26816.1.S1_at11/115+5884727..5885110hypothetical protein
LOC_Os05g10730Os.7826.2.A1_at11/115+5887293..5893730multidrug resistance associated protein 1, putative, expressed
LOC_Os05g10740Os.7826.1.S1_a_at11/115+5893355..5896224Pollen-specific protein SF21, putative, expressed
LOC_Os05g10750NANA5+5903561..5904178hypothetical protein
LOC_Os05g10760OsAffx.17654.1.S1_at10/115+5908982..5912701transposon protein, putative, unclassified, expressed
LOC_Os05g10760OsAffx.17654.3.S1_x_at9/115+5908982..5912701transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7826.2.A1_at--832--5711Chr05:5893031..5893055 (25 bp)
GACTCTGCCTTCTGTAAGCTTGTAG
LOC_Os05g10730
Os.7826.2.A1_at--271--2711Chr05:5893046..5893070 (25 bp)
AAGCTTGTAGCTGAGTACTGGTCCA
LOC_Os05g10730
Os.7826.2.A1_at--136--7011Chr05:5893060..5893084 (25 bp)
GTACTGGTCCAACTATAGCTGAATC
LOC_Os05g10730
Os.7826.2.A1_at--47--2391Chr05:5893162..5893186 (25 bp)
AAACTGGGACATTGCATTGCTGGCC
LOC_Os05g10730
Os.7826.2.A1_at--29--5651Chr05:5893302..5893326 (25 bp)
GACAGAGCAGCAGACAGGATATAAT
LOC_Os05g10730
Os.7826.2.A1_at--773--2391Chr05:5893397..5893421 (25 bp)
AAACTATTCCGAGATGTACATTTTT
LOC_Os05g10730
Os.7826.2.A1_at--28--7031Chr05:5893412..5893436 (25 bp)
GTACATTTTTGTGCTGCTGACTGCT
LOC_Os05g10730
Os.7826.2.A1_at--610--9111Chr05:5893426..5893450 (25 bp)
TGCTGACTGCTGACTACAAAAACAA
LOC_Os05g10730
Os.7826.2.A1_at--276--5511Chr05:5893454..5893478 (25 bp)
GAACAAAGAACCACCCTGAACACAT
LOC_Os05g10730
Os.7826.2.A1_at--525--1251Chr05:5893489..5893513 (25 bp)
AGATTTCCCTCTTTTCTGTCTTACT
LOC_Os05g10730
Os.7826.2.A1_at--525--7151Chr05:5893506..5893530 (25 bp)
GTCTTACTGATGTAGAACTTTCCTG
LOC_Os05g10730
Target Sequence 
GACTCTGCCTTCTGTAAGCTTGTAGCTGAGTACTGGTCCAACTATAGCTGAATCTNCCAAGANANACGGTCAGGAACATC
AAATGCAGAAGACCTTCACTGCTTTATTNTTCAGTGAATAAGTGGAACTGGAAACTGGGACATTGCATTGCTGGCCNATG
ATCATCCAGATGGACATATATGATGCACTAATGATCTGGAAAGTATGTATGAGGGGAGCTCATTCAAAACCAGGGGTTCA
TGCAATGAAATTGCAAGCCTTCTCCNNACNAGACAGAGCAGCAGACAGGATATAATAAACTTTGTTGGTAATACCANTGG
TTAAAAATCTGNAACCTGGGGTGATTGATTCTTATTTATCTGTCCCNAAACTATTCCGAGATGTACATTTTTGTGCTGCT
GACTGCTGACTACAAAAACAAATTGAACAAAGAACCACCCTGAACACATCCCCCACTACAGATTTCCCTCTTTTCTGTCT
TACTGATGTAGAACTTTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7826.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis