Browse Element(s) Details


Os.7882.1.S1_at

Description gb:NM_196465.1
DB_XREF= gi:37534289
TID=Os.7882.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7882 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0015J03.21), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2718011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27140Os.26886.1.S1_x_at11/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27140Os.26886.3.S1_x_at7/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27140OsAffx.16244.1.S1_x_at1/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27150NANA10+13976237..13977918transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27160NANA10+13981717..13982121hypothetical protein
LOC_Os10g27170Os.6364.1.S1_at11/1110+13987936..13991930calmodulin-binding family protein, putative, expressed
LOC_Os10g27170Os.6364.2.S1_at1/1110+13987936..13991930calmodulin-binding family protein, putative, expressed
LOC_Os10g27180Os.7882.1.S1_at11/1110+13994330..13998999hypothetical protein
LOC_Os10g27190Os.12292.1.S1_at11/1110+13999256..1400007940S ribosomal protein S17-4, putative, expressed
LOC_Os10g27200NANA10+14001256..14002210hypothetical protein
LOC_Os10g27210OsAffx.30558.1.S1_at11/1110+14002684..14003387hypothetical protein
LOC_Os10g27220Os.8958.1.S1_x_at11/1110+14010343..14014752Phospholipid-transporting ATPase 3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7882.1.S1_at--326--6531Chr10:13997116..13997140 (25 bp)
GATTACCAGCTTGAACTCCGGAATA
LOC_Os10g27180
Os.7882.1.S1_at--538--631Chr10:13996772..13996796 (25 bp)
ATGCTTATGGAGCTTCACAACATGG
LOC_Os10g27180
Os.7882.1.S1_at--900--5391Chr10:13996516..13996540 (25 bp)
GAAGCTCACCTGTTTCTAATAGTCA
LOC_Os10g27180
Os.7882.1.S1_at--596--2711Chr10:13996367..13996390 (24 bp)
AAGCATTCCAGGTAGTCAGTGTGAA
LOC_Os10g27180
Os.7882.1.S1_at--35--5931Chr10:13996333..13996357 (25 bp)
GAGCATACCGTGATACCTGTTTTTG
LOC_Os10g27180
Os.7882.1.S1_at--978--7151Chr10:13995763..13995787 (25 bp)
GTCTCCAGAGCCAGCAAATGCAAAT
LOC_Os10g27180
Os.7882.1.S1_at--1087--2271Chr10:13995742..13995766 (25 bp)
AAATGCCGAAACAGCTGACTGCCTA
LOC_Os10g27180
Os.7882.1.S1_at--870--8931Chr10:13995727..13995751 (25 bp)
TGACTGCCTACATGGATCCGAAGAT
LOC_Os10g27180
Os.7882.1.S1_at--771--10171Chr10:13994392..13994416 (25 bp)
TATATCCAACTTACACTTTCGCTAC
LOC_Os10g27180
Os.7882.1.S1_at--850--3671Chr10:13994377..13994401 (25 bp)
CTTTCGCTACTTCTTGTTGGGATCA
LOC_Os10g27180
Os.7882.1.S1_at--899--10831Chr10:13994361..13994385 (25 bp)
TTGGGATCAAATCCCTCTTGCACGG
LOC_Os10g27180
Target Sequence 
GATTACCAGCTTGAACTCCGGAATAGGGCGAGGTTGATATATGAATTGAGGGAACGCCTTGAGGCTGAGAAACTCAACAC
CAAATTTCAGCCCAAACTAGAAGAAATATCCATTTCTACTGAGTTAAAAGCAATGCTTATGGAGCTTCACAACATGGAGA
TTGCTTTACATAAATTTCAAGACATATTTGACAGTATTGGGCATGAGGTAATAAAAAGAAGCTCACCTGTTTCTAATAGT
CAGGATGTAACAGAAGATGTGAATAGAGAAAAACTAGAAAGCATTCCAGGTAGTCAGTGTGAACCAGCTAATGAGCATAC
CGTGATACCTGTTTTTGATGAAGCAGCAACTACTCCGAACATAGAAGGTCAGTCGGAAATTGACCCAGGCAGAAAACAAC
ATTCTGCTTTGCCGTCTCCAGAGCCAGCAAATGCAAATGCCGAAACAGCTGACTGCCTACATGGATCCGAAGATATTGAC
ATGGATCTTGCATCAAGATTCATGTTGCTGTATATCCAACTTACACTTTCGCTACTTCTTGTTGGGATCAAATCCCTCTT
GCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis