Browse Element(s) Details


Os.7899.1.S1_at

Description gb:AB074412.1
DB_XREF= gi:20152204
GEN=OsUBC5b
TID=Os.7899.1
CNT=39
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.7899 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for ubiquitin-conjugating enzyme OsUBC5b, complete cds.
PROD=ubiquitin-conjugating enzyme OsUBC5b
FL= gb:AK121248.1 gb:AB074412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1604011/11Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16010Os.46986.1.S1_at2/112+9089342..9095713retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g16020NANA2+9097488..9098827hypothetical protein
LOC_Os02g16030OsAffx.2637.1.S1_at11/112+9106570..9107991Harpin-induced protein 1 containing protein, expressed
LOC_Os02g16040Os.7899.1.S1_at11/112+9116018..9119492Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os02g16050Os.14919.1.S1_at5/112+9123054..9130846transposon protein, putative, Mutator sub-class
LOC_Os02g16050Os.56216.1.S1_at2/112+9123054..9130846transposon protein, putative, Mutator sub-class
LOC_Os02g16050OsAffx.29313.1.S1_at1/112+9123054..9130846transposon protein, putative, Mutator sub-class
LOC_Os02g16060OsAffx.12065.1.S1_at11/112+9136746..9140118NBS-LRR disease resistance protein, putative, expressed
LOC_Os02g16070OsAffx.12066.1.S1_at10/112+9142456..9144354Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7899.1.S1_at--340--5011Chr02:9117208..9117232 (25 bp)
GCAGGCAACACTGATGGGTCCATCA
LOC_Os02g16040
Os.7899.1.S1_at--1132--291Chr02:9117234..9117258 (25 bp)
ATAGCCCTTATGCTGGAGGCGTGTT
LOC_Os02g16040
Os.7899.1.S1_at--348--6211Chr02:9117249..9117273 (25 bp)
GAGGCGTGTTTTTGGTTACCATTCA
LOC_Os02g16040
Os.7899.1.S1_at--47--10471Chr02:9117264..9117288 (25 bp)
TTACCATTCATTTTCCTCCTGATTA
LOC_Os02g16040
Os.7899.1.S1_at--1129--8811Chr02:9117283..9117307 (25 bp)
TGATTATCCATTCAAACCGCCTAAG
LOC_Os02g16040
Os.7899.1.S1_at--1009--7491Chr02:9118514..9118538 (25 bp)
GTGGAGTCCTGCATTGACTATTTCA
LOC_Os02g16040
Os.7899.1.S1_at--596--2311Chr02:9119063..9119085 (23 bp)
AAAGGTGCTACTCTCAATTTGCTCG
LOC_Os02g16040
Os.7899.1.S1_at--990--3111Chr02:9119076..9119100 (25 bp)
AATTTGCTCGCTGTTGACGGATCCA
LOC_Os02g16040
Os.7899.1.S1_at--792--8831Chr02:9119148..9119172 (25 bp)
TGATCGGGCCAAGTACGAGTCCACC
LOC_Os02g16040
Os.7899.1.S1_at--510--591Chr02:9119236..9119260 (25 bp)
ATGCCATTGTATTGCCTTGTATTCT
LOC_Os02g16040
Os.7899.1.S1_at--46--3631Chr02:9119251..9119275 (25 bp)
CTTGTATTCTCCTGTAACTCTTTCA
LOC_Os02g16040
Target Sequence 
GCAGGCAACACTGATGGGTCCATCAGATAGCCCTTATGCTGGAGGCGTGTTTTTGGTTACCATTCATTTTCCTCCTGATT
ATCCATTCAAACCGCCTAAGGTGGCATTNAAGACAAAGGTGTTCCACCCAAACATTAATAGCAACGGAAGCATATGCCTT
GATATCTTGAAGGAGCAGTGGAGTCCTGCATTGACTATTTCAAAGGTGCTACTCTCAATTTGCTCGCTGTTGACGGATCC
AAATCCTGATGATCCATTGGTTCCAGAGATTGCTCACATGTACAAGACTGATCGGGCCAAGTACGAGTCCACCGCAAGGA
GCTGGACCCAGAAATATGCTATGGGCTAGAATGGTTAACAATAAGAAATGTGAGATATGCCATTGTATTGCCTTGTATTC
TCCTGTAACTCTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis