Browse Element(s) Details


Os.7940.1.S1_at

Description gb:AK067909.1
DB_XREF= gi:32977927
TID=Os.7940.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123P18, full insert sequence.
FL= gb:AK067909.1 gb:AK061422.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3412011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34070Os.19118.2.S1_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34070Os.19118.2.S1_x_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34080NANA6+19843398..19843700hypothetical protein
LOC_Os06g34090NANA6+19844505..19848821retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g34100OsAffx.4997.2.S1_at10/116+19853120..19855538hypothetical protein
LOC_Os06g34110OsAffx.27924.1.S1_at11/116+19859601..19859875hypothetical protein
LOC_Os06g34120Os.7940.1.S1_at11/116+19865075..19869007GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34129NANA6+19879521..19880064NA
LOC_Os06g34140OsAffx.22699.1.S1_x_at1/116+19884352..19891327retrotransposon protein, putative, unclassified
LOC_Os06g34140OsAffx.8201.1.S1_x_at1/116+19884352..19891327retrotransposon protein, putative, unclassified
LOC_Os06g34140OsAffx.18275.1.S1_x_at1/116+19884352..19891327retrotransposon protein, putative, unclassified
LOC_Os06g34150NANA6+19891660..19894846hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7940.1.S1_at--533--7211Chr06:19865810..19865833 (24 bp)
GTCGTCAGCCCTGGAAATTTTGGTT
LOC_Os06g34120
Os.7940.1.S1_at--621--7291Chr06:19865565..19865589 (25 bp)
GTGCTGGAGGCCAGGGCAACTACAA
LOC_Os06g34120
Os.7940.1.S1_at--87--6151Chr06:19865512..19865536 (25 bp)
GAGGGTGCTAGCGTGTGCTCCAACC
LOC_Os06g34120
Os.7940.1.S1_at--118--5751Chr06:19865467..19865491 (25 bp)
GACGGCATCCACATGACCGAAGCCG
LOC_Os06g34120
Os.7940.1.S1_at--452--4111Chr06:19865437..19865461 (25 bp)
CGCTATGTCGCCAATGGCTGGCTGA
LOC_Os06g34120
Os.7940.1.S1_at--631--3851Chr06:19865416..19865440 (25 bp)
CTGAATGGGCCATATGCTGAGCCCC
LOC_Os06g34120
Os.7940.1.S1_at--641--6911Chr06:19865357..19865381 (25 bp)
GTATGTAACACAGCTGTTGGTGCAA
LOC_Os06g34120
Os.7940.1.S1_at--784--5371Chr06:19865247..19865271 (25 bp)
GAAGAATGTGTAAACTGTGCCAGTA
LOC_Os06g34120
Os.7940.1.S1_at--36--671Chr06:19865207..19865231 (25 bp)
ATGAATGTTGAAACTGGTGCCAGTA
LOC_Os06g34120
Os.7940.1.S1_at--210--7031Chr06:19865149..19865173 (25 bp)
GTACAGATGTACCATGTTTGACATG
LOC_Os06g34120
Os.7940.1.S1_at--901--6851Chr06:19865134..19865158 (25 bp)
GTTTGACATGTTCTCTGATTCTTTT
LOC_Os06g34120
Target Sequence 
GTCGTCAGCCCTGGAAATTTTGGTTTCAGCTCGNCTATGCAGGCTTGCTGTGGTGCTGGAGGCCAGGGCAACTACAACTT
CAACCTGAAGAAGAAGTGTGGTGAGGAGGGTGCTAGCGTGTGCTCCAACCCGTCGTCGTACGTGAGCTGGGACGGCATCC
ACATGACCGAAGCCGCCTACCGCTATGTCGCCAATGGCTGGCTGAATGGGCCATATGCTGAGCCCCCAATCCTCAAGTGA
GAATTTGAGGGGTTTTGACTGTATGTAACACAGCTGTTGGTGCAAAAATATATATGAATGAAGAAGGTTTCAGTCACTGA
AGAATTAAGTTATATGGGTAAAAGTTGTTTAGTTTTTTTGTTTTCATTTGGAAGAATGTGTAAACTGTGCCAGTATAGAT
ATGTTCCAAAATGAATGTTGAAACTGGTGCCAGTATAGATATGTTCCAAATTAAACTGAGAAGATGTAGTACAGATGTAC
CATGTTTGACATGTTCTCTGATTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis