CREP Browser

Description

tigr:9634.m03207
TID=OsAffx.4997.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g34100	10/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g34040	Os.19021.1.S1_at	11/11	6	+	19823524..19828658	4-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed
LOC_Os06g34049	NA	NA	6	+	19830711..19831023	NA
LOC_Os06g34060	OsAffx.15722.1.S1_at	10/11	6	+	19832829..19836069	hypothetical protein
LOC_Os06g34070	Os.19118.2.S1_at	11/11	6	+	19838362..19841723	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34070	Os.19118.2.S1_x_at	11/11	6	+	19838362..19841723	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34080	NA	NA	6	+	19843398..19843700	hypothetical protein
LOC_Os06g34090	NA	NA	6	+	19844505..19848821	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g34100	OsAffx.4997.2.S1_at	10/11	6	+	19853120..19855538	hypothetical protein
LOC_Os06g34110	OsAffx.27924.1.S1_at	11/11	6	+	19859601..19859875	hypothetical protein
LOC_Os06g34120	Os.7940.1.S1_at	11/11	6	+	19865075..19869007	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34129	NA	NA	6	+	19879521..19880064	NA

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4997.2.S1_at--91--597	1	Chr06:19853152..19853176 (25 bp)	GAGAAGGACCGATGGCAGTGAGGAT	LOC_Os06g34100
OsAffx.4997.2.S1_at--276--583	1	Chr06:19853158..19853182 (25 bp)	GACCGATGGCAGTGAGGATGGCGAG	LOC_Os06g34100
OsAffx.4997.2.S1_at--621--87	1	NONE	ATGGCGAGGAGCACGACAAAGAAGA	NONE
OsAffx.4997.2.S1_at--507--333	1	Chr06:19855437..19855458 (22 bp)	CACGACAAAGAAGATGCGGCCAAGT	LOC_Os06g34100
OsAffx.4997.2.S1_at--419--561	1	Chr06:19855437..19855461 (25 bp)	GACAAAGAAGATGCGGCCAAGTTCA	LOC_Os06g34100
OsAffx.4997.2.S1_at--642--433	2	Chr06:19855472..19855496 (25 bp)	CCATGAAGTCGTGCTGGCACTGACA	LOC_Os06g34100
OsAffx.4997.2.S1_at--888--65	2	Chr06:19855474..19855498 (25 bp)	ATGAAGTCGTGCTGGCACTGACATT	LOC_Os06g34100
OsAffx.4997.2.S1_at--672--285	2	Chr06:19855477..19855501 (25 bp)	AAGTCGTGCTGGCACTGACATTGAA	LOC_Os06g34100
OsAffx.4997.2.S1_at--1139--941	2	Chr06:19855480..19855504 (25 bp)	TCGTGCTGGCACTGACATTGAAGTC	LOC_Os06g34100
OsAffx.4997.2.S1_at--112--401	2	Chr06:19855481..19855505 (25 bp)	CGTGCTGGCACTGACATTGAAGTCA	LOC_Os06g34100
OsAffx.4997.2.S1_at--813--471	2	Chr06:19855484..19855508 (25 bp)	GCTGGCACTGACATTGAAGTCAGCC	LOC_Os06g34100

Target Sequence

GAGAAGGACCGATGGCAGTGAGGATGGCGAGGAGCACGACAAAGAAGATGCGGCCAAGTTCATGGAGCTCATCCATGAAG
TCGTGCTGGCACTGACATTGAAGTCAGCC

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Browse Element(s) Details