Browse Element(s) Details


Os.19021.1.S1_at

Description gb:AK060016.1
DB_XREF= gi:32970034
TID=Os.19021.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F09, full insert sequence.
FL= gb:AK105855.1 gb:AK072614.1 gb:AK060016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3404011/114-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34000Os.47463.1.S1_x_at6/116+19799870..19802294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34000Os.14491.2.S1_x_at5/116+19799870..19802294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34010NANA6+19805097..19808191transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34020OsAffx.15721.1.S1_at11/116+19813081..19817428Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g34030OsAffx.27923.1.S1_at10/116+19818493..19819630hypothetical protein
LOC_Os06g34040Os.19021.1.S1_at11/116+19823524..198286584-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed
LOC_Os06g34049NANA6+19830711..19831023NA
LOC_Os06g34060OsAffx.15722.1.S1_at10/116+19832829..19836069hypothetical protein
LOC_Os06g34070Os.19118.2.S1_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34070Os.19118.2.S1_x_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34080NANA6+19843398..19843700hypothetical protein
LOC_Os06g34090NANA6+19844505..19848821retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g34100OsAffx.4997.2.S1_at10/116+19853120..19855538hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009228biological_processthiamin biosynthesis
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19021.1.S1_at--907--6411Chr06:19824211..19824713 (25 bp)
GATCTCATTTTGTTACCAGGTGGTC
LOC_Os06g34040
Os.19021.1.S1_at--1067--7731Chr06:19824184..19824208 (25 bp)
GGTGGTGCCCAAGCATATGCAAAGT
LOC_Os06g34040
Os.19021.1.S1_at--201--2591Chr06:19823925..19823949 (25 bp)
AAGAAGGCTACATCCTTTCCTGGTA
LOC_Os06g34040
Os.19021.1.S1_at--254--771Chr06:19823901..19823925 (25 bp)
ATGTGGAACAAGCTCTCGGACCAAA
LOC_Os06g34040
Os.19021.1.S1_at--683--6651Chr06:19823853..19823877 (25 bp)
GTTGATGGCAACCTAATCACCAGCC
LOC_Os06g34040
Os.19021.1.S1_at--1080--2891Chr06:19823828..19823852 (25 bp)
AAGGTCCAGGCACATCCATGGAGTT
LOC_Os06g34040
Os.19021.1.S1_at--1092--5891Chr06:19823757..19823781 (25 bp)
GAGCTCGCCAAAACCATGGTCTTCA
LOC_Os06g34040
Os.19021.1.S1_at--244--271Chr06:19823677..19823701 (25 bp)
ATATGAGGCATCCTTTTGCTCGTAG
LOC_Os06g34040
Os.19021.1.S1_at--636--7711Chr06:19823645..19823669 (25 bp)
GGTGGAAAGCACTTCGTAATCCTTT
LOC_Os06g34040
Os.19021.1.S1_at--73--8291Chr06:19823615..19823639 (25 bp)
GGCTTTCTCTTCCACAATAACACGA
LOC_Os06g34040
Os.19021.1.S1_at--1097--6011Chr06:19823551..19823575 (25 bp)
GAGATGGATATTGCACCTTTGGGTT
LOC_Os06g34040
Target Sequence 
GATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAA
GCAAGCTGAGGCAAACAAGCTATATGGAGCTATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGG
GAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGAT
GGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGA
GAGGGCCGTCGAGCTCGCCAAAACCATGGTCTTCATGTGAGTTGTGTTGTTACATACTACGTGTAAGACAACACCATAGT
CAGACTCTGAATATGAGGCATCCTTTTGCTCGTAGCTGGTGTGGTGGAAAGCACTTCGTAATCCTTTTTTTTGGCTTTCT
CTTCCACAATAACACGACGTCTTGTTATGTGTACAACCGTACAAATGCAATAAAAAGAGATGGATATTGCACCTTTGGGT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis