Browse Element(s) Details


OsAffx.15722.1.S1_at

Description tigr:9634.m03203
TID=OsAffx.15722.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3406010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34010NANA6+19805097..19808191transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34020OsAffx.15721.1.S1_at11/116+19813081..19817428Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g34030OsAffx.27923.1.S1_at10/116+19818493..19819630hypothetical protein
LOC_Os06g34040Os.19021.1.S1_at11/116+19823524..198286584-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed
LOC_Os06g34049NANA6+19830711..19831023NA
LOC_Os06g34060OsAffx.15722.1.S1_at10/116+19832829..19836069hypothetical protein
LOC_Os06g34070Os.19118.2.S1_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34070Os.19118.2.S1_x_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34080NANA6+19843398..19843700hypothetical protein
LOC_Os06g34090NANA6+19844505..19848821retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g34100OsAffx.4997.2.S1_at10/116+19853120..19855538hypothetical protein
LOC_Os06g34110OsAffx.27924.1.S1_at11/116+19859601..19859875hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15722.1.S1_at--908--8711Chr06:19833966..19833990 (25 bp)
TGTCGCTGCTGGACGTCACGCGGAT
LOC_Os06g34060
OsAffx.15722.1.S1_at--663--771Chr06:19833989..19834013 (25 bp)
ATGTCGCAGCTGAGGATCGACGCGC
LOC_Os06g34060
OsAffx.15722.1.S1_at--1115--831Chr06:19834049..19834073 (25 bp)
ATGGACTGCACGCACTGGTGCATCG
LOC_Os06g34060
OsAffx.15722.1.S1_at--990--8511NONE
TGGAACCACATCATGAGCTCGCCGG
NONE
OsAffx.15722.1.S1_at--50--1531Chr06:19835702..19835726 (25 bp)
AGCAGTGGTGGGAGGCCAACAACAA
LOC_Os06g34060
OsAffx.15722.1.S1_at--417--1591Chr06:19835792..19835816 (25 bp)
AGCTCGCTAGCCGTCCATTAGAAGG
LOC_Os06g34060
OsAffx.15722.1.S1_at--605--2451Chr06:19835891..19835915 (25 bp)
AACAACTCTGTCTCGGGTTCTCCTA
LOC_Os06g34060
OsAffx.15722.1.S1_at--509--10591Chr06:19835908..19835932 (25 bp)
TTCTCCTATGGTCTTGCGACACTAA
LOC_Os06g34060
OsAffx.15722.1.S1_at--913--9091Chr06:19835922..19835946 (25 bp)
TGCGACACTAAGAGTGGGCTCCTCC
LOC_Os06g34060
OsAffx.15722.1.S1_at--157--9631Chr06:19835954..19835978 (25 bp)
TCATGCTCATCCTCGAGGGACACGC
LOC_Os06g34060
OsAffx.15722.1.S1_at--761--9951Chr06:19836011..19836035 (25 bp)
TACCGCCCGGTCATGTTGAGAGTGG
LOC_Os06g34060
Target Sequence 
TGTCGCTGCTGGACGTCACGCGGATGTCGCAGCTGAGGATCGACGCGCACCCGTCGGTGTACGGGGGGCCGGGGCGGGAG
GGGATGGACTGCACGCACTGGTGCATCGCCGGCCTCCCCGACGCCTGGAACCACATCATGAGCTCGCCGGCAAGGAGAGA
GGCAGCGGCCAGCAACCCCGTCTGCGGGAGGCAACAGCAGTGGTGGGAGGCCAACAACAAGGGTTCTTTGGTGGTCCACG
ATGGAGGAGGAGAAGGGGAGGGAGGTGAGGGAGCCGACGAGCTAGAGCTCGCTAGCCGTCCATTAGAAGGCGTCGGTGGG
TGGTCTAAGACAATGGAGGAGGAGAGGACCTGGTGCCCCCAACAACTCTGTCTCGGGTTCTCCTATGGTCTTGCGACACT
AAGAGTGGGCTCCTCCCCACTACTCATGCTCATCCTCGAGGGACACGCCTCCCCGCCATTGGGGATAGGCTCGCCATTGC
TACCGCCCGGTCATGTTGAGAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis