Browse Element(s) Details


Os.19118.2.S1_x_at

Description gb:AK059898.1
DB_XREF= gi:32969916
TID=Os.19118.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.19118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-208-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-F09, full insert sequence.
FL= gb:AK059898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3407011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34020OsAffx.15721.1.S1_at11/116+19813081..19817428Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g34030OsAffx.27923.1.S1_at10/116+19818493..19819630hypothetical protein
LOC_Os06g34040Os.19021.1.S1_at11/116+19823524..198286584-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed
LOC_Os06g34049NANA6+19830711..19831023NA
LOC_Os06g34060OsAffx.15722.1.S1_at10/116+19832829..19836069hypothetical protein
LOC_Os06g34070Os.19118.2.S1_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34070Os.19118.2.S1_x_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34080NANA6+19843398..19843700hypothetical protein
LOC_Os06g34090NANA6+19844505..19848821retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g34100OsAffx.4997.2.S1_at10/116+19853120..19855538hypothetical protein
LOC_Os06g34110OsAffx.27924.1.S1_at11/116+19859601..19859875hypothetical protein
LOC_Os06g34120Os.7940.1.S1_at11/116+19865075..19869007GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19118.2.S1_x_at--440--7671Chr06:19840312..19840336 (25 bp)
GGGATTATTTCACGCCGGTTGTCCA
LOC_Os06g34070
Os.19118.2.S1_x_at--26--4491Chr06:19840299..19840323 (25 bp)
GCCGGTTGTCCAATTCTTGCTTCAG
LOC_Os06g34070
Os.19118.2.S1_x_at--1133--111Chr06:19840287..19840311 (25 bp)
ATTCTTGCTTCAGCCCGAAAAGTTT
LOC_Os06g34070
Os.19118.2.S1_x_at--394--8091Chr06:19838813..19838837 (25 bp)
GGACGGGACCTTACAATTTCAATCT
LOC_Os06g34070
Os.19118.2.S1_x_at--929--6871Chr06:19838720..19838744 (25 bp)
GTATTCACTTGACAGAGGCCGCATA
LOC_Os06g34070
Os.19118.2.S1_x_at--177--2091Chr06:19838692..19838716 (25 bp)
ACATATCGCGCGAGGTTGGTTGCAT
LOC_Os06g34070
Os.19118.2.S1_x_at--391--10771Chr06:19838632..19838656 (25 bp)
TTGAGCTCCTAGTTGTTTTGTCCAT
LOC_Os06g34070
Os.19118.2.S1_x_at--902--10391Chr06:19838617..19838641 (25 bp)
TTTTGTCCATCGTACCTCTAGGGTA
LOC_Os06g34070
Os.19118.2.S1_x_at--1084--7671Chr06:19838597..19838621 (25 bp)
GGGTATCAGAATAGCACAGCAAATT
LOC_Os06g34070
Os.19118.2.S1_x_at--343--751Chr06:19838542..19838566 (25 bp)
ATGTATATCTCCTTCGATTCGTTGC
LOC_Os06g34070
Os.19118.2.S1_x_at--905--6071Chr06:19838391..19838415 (25 bp)
GAGTTTCTTTGTGTGTAGCATCTGC
LOC_Os06g34070
Target Sequence 
GGGATTATTTCACGCCGGTTGTCCAATTCTTGCTTCAGCCCGAAAAGTTTGGATTTTACAAACAATTGCCTAGAGCATGC
TGTGGTGCTCCTGGGACGGGACCTTACAATTTCAATCTGACGGCCAAATGCGGTGAGCCTGGTGCCACTGCATGTGCCGA
CCCCAAGACACACTGGAGCTGGGATGGTATTCACTTGACAGAGGCCGCATATGGACATATCGCGCGAGGTTGGTTGCATG
GCCCATTCGGGGATCAACCTATCGTACAGAATTCTTGAGCTCCTAGTTGTTTTGTCCATCGTACCTCTAGGGTATCAGAA
TAGCACAGCAAATTGGATCAGAAAGGTTGTTTCCATATAGTTGTATGTATATCTCCTTCGATTCGTTGCGATCAGGTAAA
AAAGAAAAGTTGAGATAGAGAGGTCTGAAATTAAAGCATGATTTTGTTCATTCATCAGGTGAGGTGGTATGAGTAAAAAA
NAGGTGTATTGCACAAAGTGGTTAACATATGATACAGAGTTTCTTTGTGTGTAGCATCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19118.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis