Browse Element(s) Details


OsAffx.27923.1.S1_at

Description tigr:9634.m03200
TID=OsAffx.27923.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3403010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33990OsAffx.15720.1.S1_at10/116+19794311..19795809hypothetical protein
LOC_Os06g34000Os.47463.1.S1_x_at6/116+19799870..19802294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34000Os.14491.2.S1_x_at5/116+19799870..19802294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34010NANA6+19805097..19808191transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34020OsAffx.15721.1.S1_at11/116+19813081..19817428Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g34030OsAffx.27923.1.S1_at10/116+19818493..19819630hypothetical protein
LOC_Os06g34040Os.19021.1.S1_at11/116+19823524..198286584-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed
LOC_Os06g34049NANA6+19830711..19831023NA
LOC_Os06g34060OsAffx.15722.1.S1_at10/116+19832829..19836069hypothetical protein
LOC_Os06g34070Os.19118.2.S1_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34070Os.19118.2.S1_x_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34080NANA6+19843398..19843700hypothetical protein
LOC_Os06g34090NANA6+19844505..19848821retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27923.1.S1_at--1101--5491Chr06:19819568..19819592 (25 bp)
GAACACCATTGAGCACGGACTTGAC
LOC_Os06g34030
OsAffx.27923.1.S1_at--660--6511Chr06:19819543..19819567 (25 bp)
GATATTGTGGATCGTCTACCACCTG
LOC_Os06g34030
OsAffx.27923.1.S1_at--1119--9971Chr06:19819527..19819551 (25 bp)
TACCACCTGTTCGAGACAATGACCG
LOC_Os06g34030
OsAffx.27923.1.S1_at--162--691Chr06:19819509..19819533 (25 bp)
ATGACCGCGATGGAGACATTGTGTA
LOC_Os06g34030
OsAffx.27923.1.S1_at--1017--691Chr06:19819482..19819506 (25 bp)
ATGAGAACGGACTAGCAGGCAACAC
LOC_Os06g34030
OsAffx.27923.1.S1_at--719--5251Chr06:19819452..19819476 (25 bp)
GAATGACTACATCAACGCGTTCACC
LOC_Os06g34030
OsAffx.27923.1.S1_at--410--4151NONE
CGCGTTCACCGCAATTGTCATGGAA
NONE
OsAffx.27923.1.S1_at--972--7311Chr06:19818645..19819073 (25 bp)
TTCAAAAGGGCCACACTTTCGCCAT
LOC_Os06g34030
OsAffx.27923.1.S1_at--478--3031Chr06:19818618..19818642 (25 bp)
AATGCCACCGCTGCCATGGGATTGG
LOC_Os06g34030
OsAffx.27923.1.S1_at--637--1911Chr06:19818591..19818615 (25 bp)
ACGTGTAGAGAAATTGCCCCAGTCA
LOC_Os06g34030
OsAffx.27923.1.S1_at--107--2771Chr06:19818540..19818564 (25 bp)
AAGACTACATTAGCACCTTCTGATG
LOC_Os06g34030
Target Sequence 
GAACACCATTGAGCACGGACTTGACGATATTGTGGATCGTCTACCACCTGTTCGAGACAATGACCGCGATGGAGACATTG
TGTACGATGAGAACGGACTAGCAGGCAACACGAGAGGAATGACTACATCAACGCGTTCACCGCAATTGTCATGGAATACT
ACGCAAAGCTTCAAAAGGGCCACACTTTCGCCATTCAATGCCACCGCTGCCATGGGATTGGGCACGTGTAGAGAAATTGC
CCCAGTCAATGGGCATACATTGCTAAAGAAGATGAAGACTACATTAGCACCTTCTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis